ID:

eca-mir-873

 Coordinate:

chr23:46420618-46420694 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.7 -34.3 -34.2 -33.7

Sense Strand Reads

AAGTGTCAGCCTCTACTTATCTGCCAAGGGTACCTGCTTAAAAGAAGTTTGTGTGCATTTGCAGGAACTTGTGAGTCTCCTATTGAAAATGAACAGGAGACTGATGAGTTCCCGGGAACACCCACAAATCTTCCTACTCATTTCTGCTGCTTTGCAACGGACAGCGCGCTTACTACT

*********************************************((((((((....(((...(((((((((.((((((((.((.......)).)))))))).)))))))))...)))....))))))..))********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
............................................................GCAGGAACTTGTGAGTCTCCT................................................................................................ 21 0 1 14.00 14 14
................................................................................................GAGACTGATGAGTTCCCGGGA............................................................ 21 0 1 13.00 13 13
................................................................................................GAGACTGATGAGTTCCCGGGAT........................................................... 22 1 1 10.00 10 10
................................................................................................GAGACTGATGAGTTCCCGGGAA........................................................... 22 0 1 6.00 6 6
...........................................................TGCAGGAACTTGTGAGTCTCC................................................................................................. 21 0 1 5.00 5 5
...............................................................................................GGAGACTGATGAGTTCCCGGGA............................................................ 22 0 1 3.00 3 3
................................................................................................GAGACTGATGAGTTCCCGGGAAT.......................................................... 23 1 1 3.00 3 3
................................................................................................GAGACTGATGAGTTCCCGGGAAA.......................................................... 23 1 1 3.00 3 3
............................................................GCAGGAACTTGTGAGTCTCC................................................................................................. 20 0 1 2.00 2 2
................................................................................................GAGACTGATGAGTTCCCGGGATT.......................................................... 23 2 1 2.00 2 2
...........................................................TGCAGGAACTTGTGAGTCTCCT................................................................................................ 22 0 1 2.00 2 2
................................................................................................GAGACTGATGAGTTCCCGGGAG........................................................... 22 1 1 2.00 2 2
...........................................................TGCAGGAACTTGTGAGTCTCA................................................................................................. 21 1 1 1.00 1 1
...............................................................................................GGAGACTGATGAGTTCCCGGGTAT.......................................................... 24 2 1 1.00 1 1
............................................................GCAGGAACTTGTGAGTCT................................................................................................... 18 0 1 1.00 1 1
............................................................GCAGGAACTTGTGAGTCTCGT................................................................................................ 21 1 1 1.00 1 1
...............................................................................................GGAGACTGATGAGTTCCCGGGAAT.......................................................... 24 1 1 1.00 1 1
................................................................................................GAGACTGATGAGGTCCCGGGAT........................................................... 22 2 2 0.50 1 1
............................................................GCAGGAACTTGTGAGTCTCAA................................................................................................ 21 2 4 0.25 1 1

Anti-sense strand reads

TTCACAGTCGGAGATGAATAGACGGTTCCCATGGACGAATTTTCTTCAAACACACGTAAACGTCCTTGAACACTCAGAGGATAACTTTTACTTGTCCTCTGACTACTCAAGGGCCCTTGTGGGTGTTTAGAAGGATGAGTAAAGACGACGAAACGTTGCCTGTCGCGCGAATGATGA

*********************************************((((((((....(((...(((((((((.((((((((.((.......)).)))))))).)))))))))...)))....))))))..))********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:52 AM