ID:

eca-mir-676

 Coordinate:

chrX:51938828-51938954 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.2 -37.2

Sense Strand Reads

TCTGCTCCTTCCATGAAAATGACCCTTTTTTCCTTCCAGCTGCAACACATGAGACTTCATGTTGGTTCCTCACCAGAATGCATGACTCTTCAATCTCGGGACTCGCAGAATTAATGGAATGCCGTCCTAAGGTTGTTGAGTTCTGCGTTTCTGGGCATTTCATCTCTGTGGGGAAGTACCCATTCCTTCACGCGAAAGACTGAGCCTGAAAGATGTTTCTCCCTAGA

***********************************************************************.((((((((((.(((((..((((((.(((((..(((............))).))))).))))))..))))).)))).))))))...********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.........................................................................................................................CCGTCCTAAGGTTGTTGAGTTT.................................................................................... 22 1 1 137.00 137 137
.........................................................................................................................CCGTCCTAAGGTTGTTGAGTT..................................................................................... 21 0 1 100.00 100 100
.........................................................................................................................CCGTCCTAAGGTTGTTGAGTTA.................................................................................... 22 1 1 31.00 31 31
.........................................................................................................................CCGTCCTAAGGTTGTTGAGT...................................................................................... 20 0 1 13.00 13 13
.........................................................................................................................CCGTCCTAAGGTTGTTGAGTTTT................................................................................... 23 1 1 10.00 10 10
.........................................................................................................................CCGTCCTAAGGTTGTTGAGTTTTT.................................................................................. 24 2 1 3.00 3 3
.........................................................................................................................CCGTCCTAAGGTTGTTGAGAT..................................................................................... 21 1 1 2.00 2 2
.........................................................................................................................CCGTCCTAAGGTTGTTGAGA...................................................................................... 20 1 1 2.00 2 2
.........................................................................................................................CCGTCCTAAGGTTGTTGAGTCT.................................................................................... 22 2 2 2.00 4 4
.........................................................................................................................CCGTCCTAAGGTTGGTGAGTTT.................................................................................... 22 2 1 1.00 1 1
.........................................................................................................................CCGTCCTAAGGTTGTTGAGTTAG................................................................................... 23 2 1 1.00 1 1
......................................................................................TCTTCAATCTCGGGACTCGCAGAATTAAT................................................................................................................ 29 0 1 1.00 1 1
.....................................................................................CTCTTCAATCTCGGGACTCGCAGAATTAAAT............................................................................................................... 31 2 1 1.00 1 1
.........................................................................................................................CCGTCCTAAGGTTGTTTA........................................................................................ 18 1 1 1.00 1 1
.........................................................................................................................CCGTCCTAAGGTTGTTGAGTAA.................................................................................... 22 2 1 1.00 1 1
.........................................................................................................................CCGTCCTAAGGTAGTTGAGTT..................................................................................... 21 1 1 1.00 1 1
.........................................................................................................................CCGTCCTAAGGTTGTTGAGTTG.................................................................................... 22 1 1 1.00 1 1
.........................................................................................................................CCGTCCTAAGGTGGTTGAGTTT.................................................................................... 22 2 1 1.00 1 1
.....................................................................................CTCTTCAATCTCGGGACTCGCAGAATT................................................................................................................... 27 0 1 1.00 1 1
.........................................................................................................................CCGTCCTAAGGTTGTTGAGCTT.................................................................................... 22 2 1 1.00 1 1
.........................................................................................................................CGGTCCTAAGGTTGTTGAGTT..................................................................................... 21 1 1 1.00 1 1
.........................................................................................................................CCGTCCAAAGGTTGTTGAGTTT.................................................................................... 22 2 1 1.00 1 1
.........................................................................................................................CCGTCCTAAGGGTGTTGAGTT..................................................................................... 21 1 1 1.00 1 1
.........................................................................................................................CCGTCCTAAGGGTGTTGAGTTC.................................................................................... 22 1 1 1.00 1 1
.........................................................................................................................CCGTCCTAAGGTTGTTGAGATT.................................................................................... 22 2 1 1.00 1 1
.........................................................................................................................CCGTCCTAAGGTTGTTGAGTTTA................................................................................... 23 2 1 1.00 1 1
.........................................................................................................................CAGTCCTAAGGTTGTTGAGTT..................................................................................... 21 1 1 1.00 1 1
.........................................................................................................................CCGTCCTAAGGTTGTTGAGATA.................................................................................... 22 2 1 1.00 1 1
.....................................................................................CTCTTCAATCTCGGGACTCGCA........................................................................................................................ 22 0 1 1.00 1 1
.........................................................................................................................CCGTCCTAAGGTTGTTGAGTCTT................................................................................... 23 2 1 1.00 1 1
.........................................................................................................................CCGTCCTAAGGTTGTTGAGGTTT................................................................................... 23 2 2 0.50 1 1
.........................................................................................................................CCGTCCTAAGGTTGTT.......................................................................................... 16 0 2 0.50 1 1
.........................................................................................................................CCGTCCTAAGGTTGTTAAGTTT.................................................................................... 22 2 2 0.50 1 1
.........................................................................................................................CCGTCCGAAGGTTGTTGAGGTT.................................................................................... 22 3 3 0.33 1 1
.........................................................................................................................CCGTCCGAAGGTTGTTGAGATT.................................................................................... 22 3 3 0.33 1 1
.........................................................................................................................CCGTCCTAAAGTTGTTGAGATT.................................................................................... 22 3 8 0.13 1 1

Anti-sense strand reads

AGACGAGGAAGGTACTTTTACTGGGAAAAAAGGAAGGTCGACGTTGTGTACTCTGAAGTACAACCAAGGAGTGGTCTTACGTACTGAGAAGTTAGAGCCCTGAGCGTCTTAATTACCTTACGGCAGGATTCCAACAACTCAAGACGCAAAGACCCGTAAAGTAGAGACACCCCTTCATGGGTAAGGAAGTGCGCTTTCTGACTCGGACTTTCTACAAAGAGGGATCT

**********************************************************************.((((((((((.(((((..((((((.(((((..(((............))).))))).))))))..))))).)))).))))))...*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:11 PM