ID:

eca-mir-671

 Coordinate:

chr4:102828539-102828622 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-59.1 -58.5 -58.5

Sense Strand Reads

ACAATGCGGACTACCTGGCAGCCCGAGCCCGGCTGGCTGGCGAACTGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTCCGGGCCGTGGAGCCAGGGCTGGTGCAGAAGTTCTCCCTGCGTGACTGCAGCCCTCG

************************************************((((((.((((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).)))))))).)))).)).********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
......................................................................................................TCCGGTTCTCAGGGCTCCACC............................................................. 21 0 1 55.00 55 55
......................................................................................................TCCGGTTCTCAGGGCTCCACCT............................................................ 22 0 1 45.00 45 45
...............................................................AGGAAGCCCTGGAGGGGCTGGAGG................................................................................................. 24 0 1 14.00 14 14
......................................................................................................TCCGGTTCTCAGGGCTCCACT............................................................. 21 1 1 9.00 9 9
......................................................................................................TCCGGTTCTCAGGGCTCCACCTT........................................................... 23 1 1 8.00 8 8
........................................................................................................................................................CAGAAGTTCTCCCTGCGTGACTGCAGCCCTC. 31 0 1 5.00 5 5
...............................................................AGGAAGCCCTGGAGGGGCTGGAGGT................................................................................................ 25 0 1 4.00 4 4
.......................................................................................TGATGGATGTTTTCCTCCGGTTCTCAGGGC................................................................... 30 0 1 4.00 4 4
......................................................................................................TCCGGTTCTCAGGGCTCCACCA............................................................ 22 1 1 3.00 3 3
...............................................................AGGAAGCCCTGGAGGGGCTGGAGGTT............................................................................................... 26 1 1 3.00 3 3
......................................................................................................TCCGGTTCTCAGGGCTCCACCTAAA......................................................... 25 3 1 3.00 3 3
........................................................................................................................................................CAGAAGTTCTCCCTGCGTGACTGCAGCC.... 28 0 1 3.00 3 3
......................................................................................................TCCGGTTCTCAGGGCTCCACCTTT.......................................................... 24 1 1 2.00 2 2
......................................................................................................TCCGGTTCTCAGGGCTCCAACT............................................................ 22 1 1 2.00 2 2
......................................................................................................TCCGGTTCTCAGGGCTCCACCAA........................................................... 23 2 1 2.00 2 2
ACAATGCGGACTACCTGGCAGCC................................................................................................................................................................. 23 0 1 2.00 2 2
......................................................................................................TCCGGTTCTCAGGGCTCCACCTA........................................................... 23 1 1 2.00 2 2
ACAATGCGGACTACCTGGCAGCCC................................................................................................................................................................ 24 0 1 2.00 2 2
.....................................................................................................CTCCGGTTCTCAGGGCTCCACC............................................................. 22 0 1 2.00 2 2
......................................................................................................ACCGGTTCTCAGGGCTCCACCT............................................................ 22 1 1 1.00 1 1
...........................................................................................................................TCTTCCGGGCCGTGGAGCCA......................................... 20 0 1 1.00 1 1
......................................................................................................TCCGGTTCTCAGGGCTCCACA............................................................. 21 1 1 1.00 1 1
...............................................................AGGAAGCCCTGGAGGGGCTGGAGGAAAT............................................................................................. 28 2 1 1.00 1 1
......................................................................................................TCCGGTTCTCAGGGCTCCAAC............................................................. 21 1 1 1.00 1 1
......................................................................................................TCCGGTTCTCAGGGCTCCACCTGA.......................................................... 24 2 1 1.00 1 1
...............................................................CGGAAGCCCTGGAGGGGCTGGAGGTTT.............................................................................................. 27 3 1 1.00 1 1
......................................................................................................TCCGGTTCTCAGGGCTCCACCTGTT......................................................... 25 1 1 1.00 1 1
........................................................................................................................................................CAGAAGTTCTCCCTGCGTGACTGCAGCCCT.. 30 0 1 1.00 1 1
...............................................................AGGAAGCCCTGGAGGGGCTGGAGGGTT.............................................................................................. 27 3 1 1.00 1 1
.........................................................................................ATGGATGTTTTCCTCCGGTTCTCAGGGC................................................................... 28 0 1 1.00 1 1
.....................................................................................................................TCCACCTCTTCCGGGCCGTGGAGCCAGGGTTTT.................................. 33 3 1 1.00 1 1
...............................................................CGGAAGCCCTGGAGGGGCTGGAGG................................................................................................. 24 1 1 1.00 1 1
................................................................................................TTTTCCTCCGGTTCTCAGGGCTCCACC............................................................. 27 0 1 1.00 1 1
......................................................................................................TCCGGTTCTCAGGGCTCCACCTAA.......................................................... 24 2 1 1.00 1 1
........................................................................................................................................................CAGAAGTTCTCCCTGCGTGACGGCAGC..... 27 1 1 1.00 1 1
...............................................................AGGAAGCCCTGGAGGGGCTGGAGGTTT.............................................................................................. 27 2 1 1.00 1 1
...............................................................AGGAAGCCCTGGAGGGGCTGGAGGTAAAT............................................................................................ 29 3 1 1.00 1 1
.....................................................................................................CTCCGGTTCTCAGGGCTCCACT............................................................. 22 1 1 1.00 1 1
......................................................................................................TCCGGTTCTCAGGGCTCCAC.............................................................. 20 0 1 1.00 1 1
...........................................................................................................................TCTTCCGGGCCGTGGAGCCAGGGCTGGTG................................ 29 0 1 1.00 1 1
...............................................................AGGAAGCCCTGGAGGGGCTGGAT.................................................................................................. 23 1 1 1.00 1 1
......................................................................................................TCCGGTTCTCAGGGCTACACC............................................................. 21 1 1 1.00 1 1
.CAATGCGGACTACCTGGCAGCCCGAG............................................................................................................................................................. 26 0 1 1.00 1 1
CCAATGCGGACTACCTGGCAGCCCGAGT............................................................................................................................................................ 28 2 1 1.00 1 1
...........................................................................................................................TCTTCCGGGCCGTGGAGCCAGGGCTGG.................................. 27 0 1 1.00 1 1
......................................................................................................TCCGGTTCTCAGGGCTCCACCTTAG......................................................... 25 3 1 1.00 1 1
.......................................................................................TGATGGATGTTTTCCTCCGGTGCTCAGGGC................................................................... 30 1 1 1.00 1 1
........................................................................................................................................................CAGAAGTTCTCCCTGCGTGACTGCAGCCC... 29 0 1 1.00 1 1
..................................................................................................TTCCTCCGGTTCTCAGGGCTCCACCT............................................................ 26 0 1 1.00 1 1
......................................................................................................TCCGGTTCTCAGGGCTCCACCTG........................................................... 23 1 1 1.00 1 1
...........................................................................................................................TCTTCCGGGCCGTGGAGCCAGGGCTA................................... 26 1 1 1.00 1 1
...............................................................AGGAAGCCCTGGAGGGGCTGGAG.................................................................................................. 23 0 1 1.00 1 1
....TGCGGACTACCTGGCAGCCCGAGC............................................................................................................................................................ 24 0 1 1.00 1 1
...............................................................AGGAAGCCCTGGAGGGACTGGAGGT................................................................................................ 25 1 1 1.00 1 1
...............................................................AGGAAGCCCTGGAGGGGCTGGAGGTA............................................................................................... 26 1 1 1.00 1 1
...............................................................AGGAAGCCCTGGAGGGGCTGGAGGTTTTT............................................................................................ 29 3 1 1.00 1 1
......................................................................................................TCCGGTTCTCAGGGCTCCACCAAA.......................................................... 24 3 2 1.00 2 2
......................................................................................................TCCGGTTCTCAGGGCTCCACCTAT.......................................................... 24 1 1 1.00 1 1
......................................................................................................TCCGGTTCTCAGGGCTCCACCG............................................................ 22 1 1 1.00 1 1
......................................................................................................TCCGGTTCTCAGGGCTCCACTAT........................................................... 23 3 6 0.17 1 1
......................................................................................................TCCGGTTCTCAGGGCTCCAGT............................................................. 21 2 7 0.14 1 1

Anti-sense strand reads

TGTTACGCCTGATGGACCGTCGGGCTCGGGCCGACCGACCGCTTGACCGTCCGGTCCTTCTCCTCCTTCGGGACCTCCCCGACCTCCACTACCTACAAAAGGAGGCCAAGAGTCCCGAGGTGGAGAAGGCCCGGCACCTCGGTCCCGACCACGTCTTCAAGAGGGACGCACTGACGTCGGGAGC

**********************************************((((((.((((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).)))))))).)))).)).************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:02 PM