ID:

eca-mir-664

 Coordinate:

chr30:10420840-10420913 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-22.9 -22.6 -22.5

Sense Strand Reads

GTGTTGAGTGCAGTTCAGGGTAGCTTCCCTGTTCTGTTAATTAGACTTTGGAACATTGAAACAGGCTAGGAAAACTGATTGGATAGAAAATATTACTCTATTCATTTATCTCCTAGCCTACAAAGTCGGAAAAAAAGGGTACAATGAACTTTATTGTATGTGTGTCTTTATATA

**********************************************(((.((...(((....(((((((((....(((.((((((((.........)))))))).)))..))))))))).)))..)).)))...**************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................................................................TATTCATTTATCTCCTAGCCT....................................................... 21 0 1 17.00 17 17
.............................................................CAGGCTAGGAAAACTGATTGGA........................................................................................... 22 0 1 10.00 10 10
.............................................................CAGGCTAGGAAAACTGATTGGAT.......................................................................................... 23 0 1 10.00 10 10
..................................................................................................TATTCATTTATCTCCTAGCCTACT.................................................... 24 1 1 8.00 8 8
..................................................................................................TATTCATTTATCTCCTAGCCTA...................................................... 22 0 1 5.00 5 5
..................................................................................................TATTCATTTATCTCCTAGCCTAC..................................................... 23 0 1 5.00 5 5
....................................................................................................TTCATTTATCTCCTAGCCTACA.................................................... 22 0 1 4.00 4 4
............................................................ACAGGCTAGGAAAACTGATTGGAT.......................................................................................... 24 0 1 4.00 4 4
.............................................................CAGGCTAGGAAAACTGATTGGATAGA....................................................................................... 26 0 1 4.00 4 4
..................................................................................................TATTCATTTATCTCCTAGCCTACA.................................................... 24 0 1 3.00 3 3
....................................................................................................TTCATTTATCTCCTAGCCTAC..................................................... 21 0 1 2.00 2 2
..................................................................................................TATTCATTTATCTCCTAGC......................................................... 19 0 1 2.00 2 2
.............................................................CAGGCTAGGAAAACTGATTGGG........................................................................................... 22 1 1 1.00 1 1
...........................................................TCCAGGCTAGGAAAACTGATTTGAT.......................................................................................... 25 3 1 1.00 1 1
..................................................................................................TATTCATTTATCTCCTAGCC........................................................ 20 0 1 1.00 1 1
..................................................................................................TATTCATTTATCTCCTAGCCTACAAA.................................................. 26 0 1 1.00 1 1
............................................................ACAGGCTAGGAAAACTGATTGGAAT......................................................................................... 25 2 1 1.00 1 1
.............................................................CAGGCTAGGAAACCTGATTGGAT.......................................................................................... 23 1 1 1.00 1 1
..................................................................................................TATTCATTTATCTCCTAGCAT....................................................... 21 1 1 1.00 1 1
.............................................................CAGGCTAGGAAAACTGATTGGATAGAT...................................................................................... 27 1 1 1.00 1 1
..................................................................................................TATTCATTTATCTCCTAGCCTTT..................................................... 23 2 1 1.00 1 1
....................................................................................................TTCATTTATCTCCTAGCCTACG.................................................... 22 1 1 1.00 1 1
.............................................................CAGGCTAGGAGAACTGATTGGA........................................................................................... 22 1 1 1.00 1 1
....................................................................................................TTCATTTATCTCCTAGCCTACT.................................................... 22 1 1 1.00 1 1
..........................................................................................TATTACTCTATTCATTTATCTCCTAGCCTACAAAG................................................. 35 0 1 1.00 1 1
............................................................ACAGGCTAGGAAAACTGATTGGA........................................................................................... 23 0 1 1.00 1 1
.............................................................CAGGCTAGGAAAACTGCTTGG............................................................................................ 21 1 1 1.00 1 1
...........................................................AACAGGCTAGGAAAACTGATTGGAT.......................................................................................... 25 0 1 1.00 1 1

Anti-sense strand reads

CACAACTCACGTCAAGTCCCATCGAAGGGACAAGACAATTAATCTGAAACCTTGTAACTTTGTCCGATCCTTTTGACTAACCTATCTTTTATAATGAGATAAGTAAATAGAGGATCGGATGTTTCAGCCTTTTTTTCCCATGTTACTTGAAATAACATACACACAGAAATATAT

****************************************(((.((...(((....(((((((((....(((.((((((((.........)))))))).)))..))))))))).)))..)).)))...********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:00 PM