ID:

eca-mir-6529

 Coordinate:

chr19:38814111-38814199 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.8 -34.8 -34.2

Sense Strand Reads

ATTTATGTTTTTCCTTTAACTTTCCATTTTTCTAACATCTCAGATGAGACAACCTGTTCTCTTGAGAGATCAGAGGCGCAGAGTGCGTCAATGTCAGTGAAGCCTGTGCCTTTTACCTCTTTAAGAGCGCACGGTTTCATTCTGCTCCTAAACTAAGAACTCCTTAGTCTTGTTTAAAAAAATATTttt

************************************************..(((((((.((((((((((...((((((((((...((.(((.......))).))))))))))))...))).))))))).))).))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...............................................................GAGAGATCAGAGGCGCAGAGT......................................................................................................... 21 0 1 234.00 234 234
...............................................................GAGAGATCAGAGGCGCAGAG.......................................................................................................... 20 0 1 23.00 23 23
...............................................................GAGAGATCAGAGGCGCAGA........................................................................................................... 19 0 1 8.00 8 8
...............................................................GAGAGATCAGAGGCGCAGAGA......................................................................................................... 21 1 1 7.00 7 7
...............................................................GAGAGATCAGAGGCGCAGAGTA........................................................................................................ 22 1 1 7.00 7 7
...............................................................GAGAGATCAGAGGCGCAGAGTAA....................................................................................................... 23 2 1 7.00 7 7
...............................................................GAGAGATCAGAGGCGCAGAGTT........................................................................................................ 22 1 1 5.00 5 5
...............................................................GAGAGATCAGAGGCGCAGAGTAT....................................................................................................... 23 2 1 5.00 5 5
...............................................................GAGAGATCAGAGGCGCAGAGTG........................................................................................................ 22 0 1 4.00 4 4
...............................................................GAGAGATCAGAGGCGCAGAGTTT....................................................................................................... 23 2 1 4.00 4 4
......................................................................................................CCTGTGCCTTTTACCTCTTTAA................................................................. 22 0 1 3.00 3 3
...............................................................GAGAGATCAGAGGCGCAGAGTGA....................................................................................................... 23 1 1 2.00 2 2
...............................................................GAGAGATCAGAGGCGCAGATT......................................................................................................... 21 1 1 2.00 2 2
...............................................................GAGAGATCAGAGGCGCGGAG.......................................................................................................... 20 1 1 2.00 2 2
...............................................................GAGAGATCAGAGGCGCAGACT......................................................................................................... 21 1 1 2.00 2 2
..............................................................TGAGAGATCAGAGGCGCAGCGT......................................................................................................... 22 1 1 1.00 1 1
..............................................................TGAGAGATCAGAGGCGCAGAG.......................................................................................................... 21 0 1 1.00 1 1
...............................................................GAGAGATCAGAAGCGCAGAGT......................................................................................................... 21 1 1 1.00 1 1
......................................................................................................CCTGTGCCTTTTACCTCTTTAT................................................................. 22 1 1 1.00 1 1
...............................................................GAGAGATCAGAGGCACAGAGT......................................................................................................... 21 1 1 1.00 1 1
..............................................................TGAGAGATCAGAGGCGCAGAAT......................................................................................................... 22 1 1 1.00 1 1
......................................................................................................CCTGTGCCTTTTACCTCTTTT.................................................................. 21 1 1 1.00 1 1
......................................................................................................CCTGTGCCTTTTACCTCTTTAAT................................................................ 23 1 1 1.00 1 1
..............................................................TGAGAGATCAGAGGCGCAGAGT......................................................................................................... 22 0 1 1.00 1 1
...............................................................GAGAGATCAGAGGCGCAGAGTGC....................................................................................................... 23 0 1 1.00 1 1
..............................................................TGAGAGATCAGAGGCGGAGAGT......................................................................................................... 22 1 1 1.00 1 1
...............................................................GAGAGATCAGAGGCGCAGAGTGCG...................................................................................................... 24 0 1 1.00 1 1
...............................................................GAGAGATCAGAGGCGCAGAA.......................................................................................................... 20 1 1 1.00 1 1
...............................................................GAGAGATCAGAGGCGCAGAAT......................................................................................................... 21 1 1 1.00 1 1
...............................................................GAGAGAGCAAAGGCGCAGAGTGCG...................................................................................................... 24 2 1 1.00 1 1
......................................................................................................CCTGTGCCTTTTACGTCTTT................................................................... 20 1 1 1.00 1 1
...............................................................GAGAGATCAGAGGCGCAGAGAA........................................................................................................ 22 2 14 0.36 5 5
...............................................................GAGAGATCAGAGGCGCAGAGCT........................................................................................................ 22 2 3 0.33 1 1
...............................................................GAGAGATCAGAGGCGCAGAGAT........................................................................................................ 22 2 7 0.14 1 1
...............................................................GAGAGATCAGAGGCGCAGAGTAGA...................................................................................................... 24 3 10 0.10 1 1

Anti-sense strand reads

TAAATACAAAAAGGAAATTGAAAGGTAAAAAGATTGTAGAGTCTACTCTGTTGGACAAGAGAACTCTCTAGTCTCCGCGTCTCACGCAGTTACAGTCACTTCGGACACGGAAAATGGAGAAATTCTCGCGTGCCAAAGTAAGACGAGGATTTGATTCTTGAGGAATCAGAACAAATTTTTTTATAAttt

**************************************************..(((((((.((((((((((...((((((((((...((.(((.......))).))))))))))))...))).))))))).))).))))...************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:47 AM