ID:

eca-mir-542

 Coordinate:

chrX:106949741-106949826 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.6 -36.6

Sense Strand Reads

TTCTCTAAAAAGTCTTTAGGGGTCATGGGCAACACAGAAATTTTGAGTCAAGGACCTCAGACATCTCGGGGATCATCATGTCACGAGATACCACTGTGCACTTGTGACAGATTGATAACTGAAAGGTCTGGGAGCCATTCATCCTCATGGCAATACAACTGGTAAGTATCACAAGAACGGTGGATG

**************************************************.((..(((((((...((((..((((...(((((((((.(((....)))..)))))))))...))))..))))...)))))))..))...*********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
......................................................................................................TGTGACAGATTGATAACTGAAA.............................................................. 22 0 1 798.00 798 798
.....................................................................................................TTGTGACAGATTGATAACTGT................................................................ 21 1 1 165.00 165 165
......................................................................................................TGTGACAGATTGATAACTGAA............................................................... 21 0 1 159.00 159 159
......................................................................................................TGTGACAGATTGATAACTGA................................................................ 20 0 1 157.00 157 157
......................................................................................................TGTGACAGATTGATAACTGAAAGT............................................................ 24 1 1 154.00 154 154
......................................................................................................TGTGACAGATTGATAACTGT................................................................ 20 1 1 147.00 147 147
.....................................................................................................TTGTGACAGATTGATAACT.................................................................. 19 0 1 92.00 92 92
.....................................................................................................TTGTGACAGATTGATAACTGA................................................................ 21 0 1 74.00 74 74
.................................................................TCGGGGATCATCATGTCACGAGA.................................................................................................. 23 0 1 62.00 62 62
.....................................................................................................TTGTGACAGATTGATAACTGAAA.............................................................. 23 0 1 61.00 61 61
......................................................................................................TGTGACAGATTGATAACTGAAAT............................................................. 23 1 1 51.00 51 51
......................................................................................................TGTGACAGATTGATAACTG................................................................. 19 0 1 50.00 50 50
.....................................................................................................TTGTGACAGATTGATAACTG................................................................. 20 0 1 49.00 49 49
......................................................................................................TGTGACAGATTGATAACTGAAAG............................................................. 23 0 1 44.00 44 44
......................................................................................................TGTGACAGATTGATAACTGAAT.............................................................. 22 1 1 37.00 37 37
.....................................................................................................TTGTGACAGATTGATAACTGAA............................................................... 22 0 1 37.00 37 37
................................................................CTCGGGGATCATCATGTCACG..................................................................................................... 21 0 1 32.00 32 32
.................................................................TCGGGGATCATCATGTCACGA.................................................................................................... 21 0 1 32.00 32 32
.................................................................TCGGGGATCATCATGTCACG..................................................................................................... 20 0 1 18.00 18 18
......................................................................................................TGTGACAGATTGATAACTGAAAA............................................................. 23 1 1 13.00 13 13
......................................................................................................TGTGACAGATTGATAACTGAAAC............................................................. 23 1 1 12.00 12 12
................................................................CTCGGGGATCATCATGTCAC...................................................................................................... 20 0 1 11.00 11 11
......................................................................................................TGTGACAGATTGATAACTGAAATA............................................................ 24 2 1 11.00 11 11
......................................................................................................TGTGACAGATTGATAACT.................................................................. 18 0 1 10.00 10 10
......................................................................................................TGTGACAGATTGATAAC................................................................... 17 0 1 10.00 10 10
......................................................................................................TGTGACAGATTGATAACTGAAC.............................................................. 22 1 1 9.00 9 9
......................................................................................................TGTGACAGATTGATAACTGAAG.............................................................. 22 1 1 9.00 9 9
.....................................................................................................TTGTGACAGATTGATAACTGAAT.............................................................. 23 1 1 8.00 8 8
................................................................CTCGGGGATCATCATGTCACGA.................................................................................................... 22 0 1 7.00 7 7
.................................................................TCGGGGATCATCATGTCACGAGT.................................................................................................. 23 1 1 6.00 6 6
......................................................................................................TGTGACAGATTGGTAACTGAAA.............................................................. 22 1 1 6.00 6 6
......................................................................................................TGTGACAGATTGATAACTGAAAGA............................................................ 24 1 1 6.00 6 6
......................................................................................................TGTGACAGATTGATAACTGAT............................................................... 21 1 1 5.00 5 5
......................................................................................................TGTGACAGATTGATAACTGG................................................................ 20 1 1 5.00 5 5
......................................................................................................TGTGACAGATTGATAAATGAAA.............................................................. 22 1 1 5.00 5 5
......................................................................................................TGTGACAGATTGATAACTGGAA.............................................................. 22 1 1 4.00 4 4
.................................................................TCGGGGATCATCATGTCAC...................................................................................................... 19 0 1 4.00 4 4
........................................................................................................TGACAGATTGATAACTGAAAGT............................................................ 22 1 1 4.00 4 4
......................................................................................................TGTGACAGATTGATAAGTGAAA.............................................................. 22 1 1 3.00 3 3
......................................................................................................TGTGACAGATTGATAACTGAAATT............................................................ 24 2 1 3.00 3 3
................................................................CTCGGGGATCATCATGTCACGT.................................................................................................... 22 1 1 3.00 3 3
.....................................................................................................TTGTGACAGATTGATAAC................................................................... 18 0 1 3.00 3 3
......................................................................................................TGTGACAGATGGATAACTGAAA.............................................................. 22 1 1 3.00 3 3
.....................................................................................................TTGTGACAGATTGATAACTGAT............................................................... 22 1 1 3.00 3 3
.................................................................TCGGGGATCATCATGTCACGAG................................................................................................... 22 0 1 3.00 3 3
.................................................................TCGGGGATCATCATGTCACGT.................................................................................................... 21 1 1 2.00 2 2
...............................................................TCTCGGGGATCATCATGTAA....................................................................................................... 20 1 1 2.00 2 2
...............................................................TCTCGGGGATCATCATGTCACG..................................................................................................... 22 0 1 2.00 2 2
......................................................................................................TGTGACAGATTGATGACTGAAA.............................................................. 22 1 1 2.00 2 2
......................................................................................................TGTGACAGATTGATAACTGAAGGT............................................................ 24 2 1 2.00 2 2
......................................................................................................TGTGACAGATTGATAAGTGAAAGT............................................................ 24 2 1 2.00 2 2
.................................................................TCGGGGATCATCATGTCA....................................................................................................... 18 0 1 2.00 2 2
.................................................................TCGGGGATCATCATGTCACGAC................................................................................................... 22 1 1 1.00 1 1
.....................................................................................................TTGTGACAGATGGATAACTGAAA.............................................................. 23 1 1 1.00 1 1
......................................................................................................TGTGACAGATTGATAGCTGAAAT............................................................. 23 2 1 1.00 1 1
.....................................................................................................TTGTGGCAGATTGATAACTGA................................................................ 21 1 1 1.00 1 1
......................................................................................................TGTGACAGATTGATAACTGAATT............................................................. 23 2 1 1.00 1 1
.................................................................TCGGGGATCATCATGTGACGAGA.................................................................................................. 23 1 1 1.00 1 1
......................................................................................................TGTGACAGAGTGATAACTGGAA.............................................................. 22 2 1 1.00 1 1
.....................................................................................................TTGTGACAGATTGATAACTGAGA.............................................................. 23 1 1 1.00 1 1
......................................................................................................GGTGACAGATTGATAACTGAAA.............................................................. 22 1 1 1.00 1 1
......................................................................................................TGTGACAGATTGATAAGTGA................................................................ 20 1 1 1.00 1 1
.................................................................TCGGGGATCATCGTGTCACGAGA.................................................................................................. 23 1 1 1.00 1 1
......................................................................................................TGTGACAGAGTGATAACTGGA............................................................... 21 2 2 1.00 2 2
.....................................................................................................TTGTGACAGATTGATAACTGATT.............................................................. 23 2 1 1.00 1 1
.....................................................................................................TTGTGACAGATTGATAACTGAAAT............................................................. 24 1 1 1.00 1 1
......................................................................................................TGTGACGGATTGATAACTGAAAT............................................................. 23 2 1 1.00 1 1
......................................................................................................TGTGACAGATTGATAACTGGAAGT............................................................ 24 2 1 1.00 1 1
......................................................................................................TGTGACAGATTGATAAATGAAAGT............................................................ 24 2 1 1.00 1 1
......................................................................................................TGTGACAGATTGATGACTGAA............................................................... 21 1 2 1.00 2 2
......................................................................................................TGTGACAGATTGATAACTGAATA............................................................. 23 2 2 1.00 2 2
...............................................TCAAGGACCTCAGACATC......................................................................................................................... 18 0 1 1.00 1 1
......................................................................................................TGTGACAGATTGATAACTGGA............................................................... 21 1 1 1.00 1 1
.....................................................................................................TTGTGACAGATTGATAACTGAC............................................................... 22 1 1 1.00 1 1
.................................................................TCGGGGATCATCATGTCACGAT................................................................................................... 22 1 1 1.00 1 1
.................................................................TCGGGGATCATCATGTGACG..................................................................................................... 20 1 1 1.00 1 1
.................................................................TCGGGGATCATCATGTCACGAGC.................................................................................................. 23 1 1 1.00 1 1
......................................................................................................TGTGACAGATTGATAACTGAATG............................................................. 23 1 1 1.00 1 1
....................................................................................................TCTGTGACAGATTGATAACTGAA............................................................... 23 2 1 1.00 1 1
.................................................................CCGGGGATCATCATGTCACGAGA.................................................................................................. 23 1 1 1.00 1 1
.................................................................TCGGGGATCATAATGTCACGAGA.................................................................................................. 23 1 1 1.00 1 1
.....................................................................................................TTGTGACAGAGTGATAACTGAAA.............................................................. 23 1 1 1.00 1 1
......................................................................................................TGTGACAGATTGATAACTGATA.............................................................. 22 1 1 1.00 1 1
...............................................................TCTCGGGGATCATCATGTCAC...................................................................................................... 21 0 1 1.00 1 1
......................................................................................................TGTGACGGAATGATAACTGAAA.............................................................. 22 2 1 1.00 1 1
.....................................................................................................TTGTGACAGATTGATAGCT.................................................................. 19 1 2 1.00 2 2
......................................................................................................TGTGACAGAATGATAACTGTAA.............................................................. 22 2 1 1.00 1 1
.....................................................................................................TTGTGACAGATTGATAACTGAG............................................................... 22 1 1 1.00 1 1
.............................CAACACAGAAATTTTGAGTCAAGGACCTCAGACATC......................................................................................................................... 36 0 1 1.00 1 1
......................................................................................................TGTGACAGATTGGTAACTGAA............................................................... 21 1 1 1.00 1 1
......................................................................................................TGTGACAGATTCATAACTGA................................................................ 20 1 1 1.00 1 1
......................................................................................................TGTGACAGATTGATAACTGACA.............................................................. 22 1 1 1.00 1 1
...............................................................TCTCGGGGATCATCATGTCACGT.................................................................................................... 23 1 1 1.00 1 1
......................................................................................................TGTGACAGATTGATAAGTGAAAG............................................................. 23 1 1 1.00 1 1
...............................................................TCTCGGGGATCATCATG.......................................................................................................... 17 0 1 1.00 1 1
................................................CAAGGACCTCAGACATC......................................................................................................................... 17 0 1 1.00 1 1
.....................................................................................................TTGTGACAGGTTGATAACTGAA............................................................... 22 1 1 1.00 1 1
......................................................................................................TGTGACAGATTGATAACTGATT.............................................................. 22 2 1 1.00 1 1
.....................................................................................................TTGTGACAGATTGATAACTT................................................................. 20 1 1 1.00 1 1
.................................................................TCGGGGATCATCATGTCACGG.................................................................................................... 21 1 1 1.00 1 1
......................................................................................................TGTGACAGAATGATAACTGA................................................................ 20 1 1 1.00 1 1
......................................................................................................TGTGACAGATTGATAACTGCAA.............................................................. 22 1 1 1.00 1 1
.................................................................TCGGGGATCATCATGTCACGAAT.................................................................................................. 23 2 1 1.00 1 1
.....................................................................................................CTGTGACAGATTGATAACTGAAAGT............................................................ 25 2 2 0.50 1 1
......................................................................................................TGTGACAGACTGATAACTGAAAT............................................................. 23 2 2 0.50 1 1
......................................................................................................TGTGACAGAGTGATAACTGAAAGA............................................................ 24 2 2 0.50 1 1
.....................................................................................................TTGTGACAGATTGATAACA.................................................................. 19 1 2 0.50 1 1
......................................................................................................TGTGTCAGATTGATAACTG................................................................. 19 1 2 0.50 1 1
.................................................................TCGGGGATCATCATGTAACG..................................................................................................... 20 1 2 0.50 1 1
......................................................................................................TGTGACAGATTGATGACTG................................................................. 19 1 4 0.50 2 2
................................................................CTCGGGGATTATCATGTCAAGA.................................................................................................... 22 2 2 0.50 1 1
......................................................................................................TGTGACAGATTGGTAACTGAAGG............................................................. 23 2 2 0.50 1 1
.....................................................................................................TTGTGACAGATAGATAACTGAA............................................................... 22 1 2 0.50 1 1
......................................................................................................TGTGACAGATTGATAAGTG................................................................. 19 1 2 0.50 1 1
................................................................CTCGGGGATCAGCATGTCACGA.................................................................................................... 22 1 2 0.50 1 1
......................................................................................................TGTGACAGATTGGTAACTGAAT.............................................................. 22 2 2 0.50 1 1
.....................................................................................................TTGTGACAGATTCATAACTGT................................................................ 21 2 2 0.50 1 1
......................................................................................................TGTGACAGATTGATGAGTGAAA.............................................................. 22 2 3 0.33 1 1
......................................................................................................TGTGACGGAGTGATAACTGAAA.............................................................. 22 2 3 0.33 1 1
.......................................................................................ATACCACTGTGCACT.................................................................................... 15 0 4 0.25 1 1
.....................................................................................................TTGTGACAGAGTGATAACTGT................................................................ 21 2 4 0.25 1 1
.....................................................................................................GTGTGACAGATTGATAACTGT................................................................ 21 2 4 0.25 1 1
......................................................................................................TGTGACAGATTGATGAGTGAAAGT............................................................ 24 3 4 0.25 1 1
......................................................................................................TGTGACAGATTGGTAACTG................................................................. 19 1 4 0.25 1 1
......................................................................................................TGTGACAGATTGATAACTA................................................................. 19 1 4 0.25 1 1
......................................................................................................TGTGACAGACTGATAACTGGA............................................................... 21 2 4 0.25 1 1
......................................................................................................TGTGACAGAGTGATAACTGG................................................................ 20 2 13 0.23 3 3
......................................................................................................TGTGACAGATTGAAAACTGA................................................................ 20 1 5 0.20 1 1
.....................................................................................................TTGTGACAGATTGATAGCTGT................................................................ 21 2 6 0.17 1 1
.....................................................................................................TTGTGACAGATTGATATCTGT................................................................ 21 2 6 0.17 1 1
......................................................................................................TGTGACCGAGTGATAACTGGAA.............................................................. 22 3 7 0.14 1 1
.....................................................................................................TTGTGACAGATTGATAACTTT................................................................ 21 2 7 0.14 1 1
......................................................................................................TGTGACAGATTCATAACTGT................................................................ 20 2 9 0.11 1 1
......................................................................................................TGTGACAGATTGTTAACTGT................................................................ 20 2 19 0.05 1 1
......................................................................................................TGTGACAGATTGATAAG................................................................... 17 1 20 0.05 1 1

Anti-sense strand reads

AAGAGATTTTTCAGAAATCCCCAGTACCCGTTGTGTCTTTAAAACTCAGTTCCTGGAGTCTGTAGAGCCCCTAGTAGTACAGTGCTCTATGGTGACACGTGAACACTGTCTAACTATTGACTTTCCAGACCCTCGGTAAGTAGGAGTACCGTTATGTTGACCATTCATAGTGTTCTTGCCACCTAC

***********************************************.((..(((((((...((((..((((...(((((((((.(((....)))..)))))))))...))))..))))...)))))))..))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:13 PM