ID:

eca-mir-541

 Coordinate:

chr24:42934714-42934797 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

CCTCTTGCCCCAGTCGTAGCGAGACCAGAGGGCTTTCTGAACTCATGCCAACGTCAGGGAAAGGATTCTGCTGTCGGTCCCACTCCAGAGTTCGCAAAATGGGTGGTGGGCACAGAATCCAGTCTCTGCTTGTGGCATCTGTCGTCTGCTCCCCGACCCTCGCTCGCCAGTCCATGATTTGGGG

********************************************............((((..((((((((.((((....((((.(((............)))))))..))))))))))))..))))********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...........................................................AAAGGATTCTGCTGTCGGTCC........................................................................................................ 21 0 1 16.00 16 16
.............................................................AGGATTCTGCTGTCGGTCCCACT.................................................................................................... 23 0 1 5.00 5 5
...........................................................AAAGGATTCTGCTGTCGGTC......................................................................................................... 20 0 1 4.00 4 4
...........................................................AAAGGATTCTGCTGTCGGTCCC....................................................................................................... 22 0 1 4.00 4 4
...........................................................AAAGGATTCTGCTGTCGGTCCCACT.................................................................................................... 25 0 1 3.00 3 3
...........................................................AAAGGATTCTGCTGTCGGT.......................................................................................................... 19 0 1 3.00 3 3
...........................................................AAAGGATTCTGCTGTCGGTCCCACTCT.................................................................................................. 27 1 1 3.00 3 3
.............................................................AGGATTCTGCTGTCGGTCCCACTCCATT............................................................................................... 28 2 1 2.00 2 2
.............................................................AGGATTCTGCTGTCGGTCCCACTCT.................................................................................................. 25 1 1 2.00 2 2
............................................................AAGGATTCTGCTGTCGGTCCCACT.................................................................................................... 24 0 1 2.00 2 2
...........................................................AAAGGATTCTGCTGTCGGTCCCA...................................................................................................... 23 0 1 2.00 2 2
...........................................................AAAGGATTCTGCTGTCGGTCCCT...................................................................................................... 23 1 1 2.00 2 2
.............................................................AGGATTCTGCTGTCGGTCCCACTC................................................................................................... 24 0 1 1.00 1 1
.............................................................AGGATTCTGCTGTCGGTCCCACTCCAT................................................................................................ 27 1 1 1.00 1 1
...........................................................AAAGGATTCTGCTGTCGGTCCCAT..................................................................................................... 24 1 1 1.00 1 1
.............................................................AGGATTCTGCTGTCGGTCCCAA..................................................................................................... 22 1 1 1.00 1 1
.............................................................AGGATTCTGCTGTCGGTCCCACA.................................................................................................... 23 1 1 1.00 1 1
...........................................................CAAGGATTCTGCTGTCGGTCCCACTC................................................................................................... 26 1 1 1.00 1 1
...........................................................AAAGGATTCTGCTGTCGGTT......................................................................................................... 20 1 2 1.00 2 2
.............................................................AGGATTCTGCTGTCGGTCCCACTCCT................................................................................................. 26 1 1 1.00 1 1
.....................................................................................CAGAGTTCGCAAAATGGGTGGTGGGC......................................................................... 26 0 1 1.00 1 1
...........................................................AAAGGATTCTGCTGTCGGTCT........................................................................................................ 21 1 2 1.00 2 2
.......................................................................................................TGGTGGGCACAGAATCCAGTCT........................................................... 22 0 1 1.00 1 1
...........................................................CAAGGATTCTGCTGTCGGTC......................................................................................................... 20 1 2 0.50 1 1
...........................................................CAAGGATTCTGCTGTCGGTA......................................................................................................... 20 2 6 0.17 1 1
.............................................................AGGATTCTGCTGTCGGTCAAAA..................................................................................................... 22 3 7 0.14 1 1

Anti-sense strand reads

GGAGAACGGGGTCAGCATCGCTCTGGTCTCCCGAAAGACTTGAGTACGGTTGCAGTCCCTTTCCTAAGACGACAGCCAGGGTGAGGTCTCAAGCGTTTTACCCACCACCCGTGTCTTAGGTCAGAGACGAACACCGTAGACAGCAGACGAGGGGCTGGGAGCGAGCGGTCAGGTACTAAACCCC

**********************************************************............((((..((((((((.((((....((((.(((............)))))))..))))))))))))..))))******************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:55 AM