ID:

eca-mir-539

 Coordinate:

chr24:42917365-42917442 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.0 -29.7 -29.6

Sense Strand Reads

TAGAGCGGAAGACCTGGAGGTGCCAGTGTTCCCGTCCGTGCCGCTGTTTCATACTTGAGGAGAAATTATCCTTGCTGTGTTCGCTTTATTTGTGATGAATCATACAAGGACAATTTCTTTTTGAGTATCAAATCCTGCTTCAGCGGACCTCCTGGACTCCCTGACAAATTCGGAAAAG

*******************************************..((((.(((((((((((((((((.((((((.((((.((((.......)))).....)))))))))).))))))))))))))))).))))..******************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................................................................ATCATACAAGGACAATTTCTTT.......................................................... 22 0 1 174.00 174 174
..................................................................................................ATCATACAAGGACAATTTCTT........................................................... 21 0 1 86.00 86 86
....................................................................................................CATACAAGGACAATTTCTTTTT........................................................ 22 0 1 79.00 79 79
..................................................................................................ATCATACAAGGACAATTTCTTTT......................................................... 23 0 1 68.00 68 68
....................................................................................................CATACAAGGACAATTTCTTTT......................................................... 21 0 1 18.00 18 18
..................................................................................................ATCATACAAGGACAATTTCTTTA......................................................... 23 1 1 16.00 16 16
..................................................................................................ATCATACAAGGACAATTTCTTTTT........................................................ 24 0 1 10.00 10 10
..................................................................................................CTCATACAAGGACAATTTCTTT.......................................................... 22 1 1 10.00 10 10
.....................................................................................................ATACAAGGACAATTTCTTTTTGT...................................................... 23 1 1 8.00 8 8
..................................................................................................CTCATACAAGGACAATTTCTTTT......................................................... 23 1 1 7.00 7 7
....................................................................................................CATACAAGGACAATTTCTTTTTT....................................................... 23 1 1 5.00 5 5
..................................................................................................CTCATACAAGGACAATTTCTT........................................................... 21 1 1 5.00 5 5
..................................................................................................ATCATACAAGGACAATTTCT............................................................ 20 0 1 4.00 4 4
..........................................................GGAGAAATTGTCCTTGCTGTGT.................................................................................................. 22 1 1 4.00 4 4
..................................................................................................ATCATACAAGGACAATTTCTTA.......................................................... 22 1 1 4.00 4 4
..........................................................GGAGAAATTATCCTTGCTGTGT.................................................................................................. 22 0 1 4.00 4 4
.....................................................................................................ATACAAGGACAATTTCTTTTTG....................................................... 22 0 1 4.00 4 4
............................................................AGAAATTATCCTTGCTGTGTTC................................................................................................ 22 0 1 3.00 3 3
..................................................................................................ATCATACAAGGAGAATTTCTT........................................................... 21 1 1 2.00 2 2
..................................................................................................ATCATACAAGGACAATTTCGTTT......................................................... 23 1 1 2.00 2 2
.....................................................................................................ATACAAGGACAATTTCTTTTT........................................................ 21 0 2 2.00 4 4
..................................................................................................ATCATACAAGGACAATTTCTTC.......................................................... 22 1 1 2.00 2 2
....................................................................................................CATACAAGGACAATTTCTTTA......................................................... 21 1 1 2.00 2 2
..................................................................................................ATCATACAAGGACAATTTCATT.......................................................... 22 1 1 2.00 2 2
....................................................................................................CATACAAGGACAGTTTCTTTTT........................................................ 22 1 1 2.00 2 2
..................................................................................................ATCATACAAGGACAATTTCTTTG......................................................... 23 1 1 2.00 2 2
..................................................................................................ATCATAGAAGGACAATTTCTTT.......................................................... 22 1 1 1.00 1 1
............................................................AGAAATTATCCTTGCTGTGTT................................................................................................. 21 0 1 1.00 1 1
..................................................................................................ATCATACAAGGAAAATTTCTTT.......................................................... 22 1 1 1.00 1 1
....................................................................................................CATACAAGGACAATTTCTTGTT........................................................ 22 1 1 1.00 1 1
..................................................................................................ATCATACAAGGACAATGTCTTT.......................................................... 22 1 1 1.00 1 1
..................................................................................................ATCATACAAGGACAATTTCCTTT......................................................... 23 1 1 1.00 1 1
..................................................................................................ATCATACAAGGAGAATTTCTTTT......................................................... 23 1 1 1.00 1 1
...................................................................................................TCATACAAGGACAATTTCTTTTT........................................................ 23 0 1 1.00 1 1
...................................................................................................TCATACAAGGACAATTTCTTTT......................................................... 22 0 1 1.00 1 1
...................................................................................................TCATACAAGGACAATTTCTT........................................................... 20 0 1 1.00 1 1
....................................................................................................CATACAAGGACAATGTCTTTTT........................................................ 22 1 1 1.00 1 1
....................................................................................................CATACAAGGACAATTTCTT........................................................... 19 0 1 1.00 1 1
..................................................................................................CTCATACAAGGACAATTTCTTTTT........................................................ 24 1 1 1.00 1 1
..........................................................GGAGAAATTGTCCTTGCTGTG................................................................................................... 21 1 1 1.00 1 1
............................................................AGAAATTGTCCTTGCTGTGTTC................................................................................................ 22 1 1 1.00 1 1
..................................................................................................ATCATAAAAGGACAATTTCTTTT......................................................... 23 1 1 1.00 1 1
......................................................................................................TACAAGGACAATTTCTTTTTGA...................................................... 22 0 1 1.00 1 1
..........................................................GGAGAAATTATCCTTGCTGTGTT................................................................................................. 23 0 1 1.00 1 1
..................................................................................................ATCATAAAAGGACAATTTCTTT.......................................................... 22 1 1 1.00 1 1
..........................................................GGAGAAATTATCCTTGCTGTGTTC................................................................................................ 24 0 1 1.00 1 1
..................................................................................................ATCATACAAGGACAATATCTT........................................................... 21 1 1 1.00 1 1
............................................................CGAAATTATCCTTGCTGTGTTC................................................................................................ 22 1 1 1.00 1 1
..................................................................................................ATCATACAAGGACAATTTCTTTTA........................................................ 24 1 1 1.00 1 1
..........................................................GGAGAAATTATCCTTGCTGTGG.................................................................................................. 22 1 1 1.00 1 1
..................................................................................................ATCATACAAGGACAATTTCTTGA......................................................... 23 2 1 1.00 1 1
..........................................................GGAGAAATTATCCTTGCTGT.................................................................................................... 20 0 1 1.00 1 1
..................................................................................................ATCATACAAGGACAATTTCTTCA......................................................... 23 2 1 1.00 1 1
..................................................................................................ATCATACAAGGACAATTTCGT........................................................... 21 1 1 1.00 1 1
..................................................................................................ATCATACAAGGACAATGTCTT........................................................... 21 1 1 1.00 1 1
.....................................................................................................ATACAAGGACAATTTCTTT.......................................................... 19 0 2 0.50 1 1
....................................................................................................CATACAAGGACATTTTCTTTT......................................................... 21 1 2 0.50 1 1
..................................................................................................ATCATACAAAGACAATTTCATTT......................................................... 23 2 2 0.50 1 1
..................................................................................................ATCATACAAGGACAATTTCAT........................................................... 21 1 2 0.50 1 1
..................................................................................................ATCATACAAGGACATTTTCTT........................................................... 21 1 2 0.50 1 1
..........................................................GGAGAAATTATCCTTGGTGTGCT................................................................................................. 23 2 2 0.50 1 1
.....................................................................................................ATACAAGGACAATTTCTTTT......................................................... 20 0 2 0.50 1 1
.....................................................................................................CTACAAGGACAATTTCTTTTTG....................................................... 22 1 2 0.50 1 1
..................................................................................................CTCATACAAGGACAATTTCTTTA......................................................... 23 2 2 0.50 1 1
.....................................................................................................ATACGAGGACAATTTCTTTTT........................................................ 21 1 3 0.33 1 1
.....................................................................................................ATACAAGGACAAATTCTTTGTG....................................................... 22 2 5 0.20 1 1
..................................................................................................ATCATACAAGGAGAATTTTTTT.......................................................... 22 2 10 0.10 1 1

Anti-sense strand reads

ATCTCGCCTTCTGGACCTCCACGGTCACAAGGGCAGGCACGGCGACAAAGTATGAACTCCTCTTTAATAGGAACGACACAAGCGAAATAAACACTACTTAGTATGTTCCTGTTAAAGAAAAACTCATAGTTTAGGACGAAGTCGCCTGGAGGACCTGAGGGACTGTTTAAGCCTTTTC

*******************************************..((((.(((((((((((((((((.((((((.((((.((((.......)))).....)))))))))).))))))))))))))))).))))..******************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:55 AM