ID:

eca-mir-514b

 Coordinate:

chrX:116800086-116800180 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

GGCATGGTGAGAGGTGTTTGAGTATATGTAAAATTGCTGACTTCAGCCATTCTGTGgGgtGTtggggtTTggtGGttGTGggtttgtTGTGGgTtGtTtttTGgTTGGgtTgTgTTtGtGTGtGGTttTGgtgttgttGTtgGtgtTtGtTGGTGGTggTAGAGGAGGGGCTGTGGCCGTCTGAGTCCTTCCTTG

****************************************************.......................................................................................******************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.......................................................................................................CTTGGCATCTCTTAGAGTGAGT...................................................................... 22 1 1 68.00 68 68
.......................................................................................................CTTGGCATCTCTTAGAGTGAG....................................................................... 21 0 1 42.00 42 42
.......................................................................................................CTTGGCATCTCTTAGAGTGAGA...................................................................... 22 1 1 22.00 22 22
......................................................................................................GCTTGGCATCTCTTAGAGTGAG....................................................................... 22 0 1 12.00 12 12
...................................................................ATTCCAGGAAGTGCCAAACATG.......................................................................................................... 22 0 1 9.00 9 9
.....................................................................................................TGCTTGGCATCTCTTAGAGTGAG....................................................................... 23 0 1 7.00 7 7
......................................................................................................GCTTGGCATCTCTTAGAGTGAGA...................................................................... 23 1 1 5.00 5 5
.......................................................................................................CTTGGCATCTCTTAGAGTGAGTT..................................................................... 23 1 1 3.00 3 3
..................................................................CATTCCAGGAAGTGCCAAACAT........................................................................................................... 22 0 1 3.00 3 3
...................................................................ATTCCAGGAAGTGCCAAACATGT......................................................................................................... 23 0 1 3.00 3 3
.......................................................................................................CTTGGCATCTCTTAGAGTGAGG...................................................................... 22 0 1 3.00 3 3
...................................................................ATTCCAGGAAGTGCCAAACATGA......................................................................................................... 23 1 1 2.00 2 2
..................................................................CATTCCAGGAAGTGCCAAACATT.......................................................................................................... 23 1 1 2.00 2 2
.......................................................................................................CTTGGCATCTCTTAGAGTGAGTAAA................................................................... 25 2 1 2.00 2 2
..................................................................CATTCCAGGAAGTGCCAAACA............................................................................................................ 21 0 1 2.00 2 2
.......................................................................................................CTTGGCATCTCTTAGAGTGAGTA..................................................................... 23 2 1 2.00 2 2
...................................................................ATTCCAGGAAGGGCCAAACATGA......................................................................................................... 23 2 1 1.00 1 1
.......................................................................................................CTTGGCATCTCTTAGAGTGAGTAAAA.................................................................. 26 3 1 1.00 1 1
..................................................................CATTCCAGGAAGTGCCAAACATGT......................................................................................................... 24 0 1 1.00 1 1
.......................................................................................................CTTGGCATCTCTTAGAGTG......................................................................... 19 0 1 1.00 1 1
.......................................................................................................CTTGGCATCTCTTAGAGTGA........................................................................ 20 0 1 1.00 1 1
.......................................................................................................CTTGGCATCTCTTAGAGTGAGAGA.................................................................... 24 2 1 1.00 1 1
......................................................................................................GCTTGGCATCTCTTAGAGTG......................................................................... 20 0 1 1.00 1 1
......................................................................................................GCTTGGCATCTCGTAGAGTGAG....................................................................... 22 1 1 1.00 1 1
..................................................................CATTCCAGGAAGTGCCAAACATTT......................................................................................................... 24 1 1 1.00 1 1
.......................................................................................................CTTGGCATCTCTTAGAGTGAGAAAA................................................................... 25 2 1 1.00 1 1
....................................CTGACTTCAGCCATTCTGTGCGCAGTACC.................................................................................................................................. 29 0 1 1.00 1 1
....................................................................TTCCAGGAAGTGCCAAACATG.......................................................................................................... 21 0 1 1.00 1 1
......................................................................................................GCTTGGCATCTCTTAGAGCGAG....................................................................... 22 1 1 1.00 1 1
......................................................................................................GCTTGGCATCTATTAGAGTGAG....................................................................... 22 1 1 1.00 1 1
..................................................................CATTCCAGGAAGTGCCAAAC............................................................................................................. 20 0 1 1.00 1 1
...................................................................CTTCCAGGAAGTGCCAAACATG.......................................................................................................... 22 1 1 1.00 1 1
.......................................................................................................CTTGGCATCTCTTAGAGTGAGTAA.................................................................... 24 2 1 1.00 1 1
.......................................................................................................CTTGGCATCTCTTAGAGTGATT...................................................................... 22 2 1 1.00 1 1
...................................................................ATTCCAGGAAGTGCCAAACGT........................................................................................................... 21 1 1 1.00 1 1
.......................................................................................................CTTGGCATCTCTTAGAGTGAGTAGA................................................................... 25 3 2 1.00 2 2
.......................................................................................................CTTGGCATCTCTTAGAGTGGGT...................................................................... 22 2 2 1.00 2 2
.......................................................................................................CTTGGCATCTCCTAGAGTGAGA...................................................................... 22 2 1 1.00 1 1
.......................................................................................................CTTGGCATCTCTTAGAGTGAGTAC.................................................................... 24 3 1 1.00 1 1
...............................................CATTCTGTGCGCAGTACCC................................................................................................................................. 19 0 1 1.00 1 1
.................................................................CCATTCCAGGAAGTGCCAAACA............................................................................................................ 22 0 1 1.00 1 1
......................................................................................................GCTTGGCATCTCTTAGAGTGAGT...................................................................... 23 1 1 1.00 1 1
.......................................................................................................CTTGGCGTCACTTAGAGTGAG....................................................................... 21 2 2 0.50 1 1
.......................................................................................................CTTGGCATCTCGTAGAGTGAGT...................................................................... 22 2 2 0.50 1 1
.......................................................................................................CTTGGCATCTCTTAGAGTGGGA...................................................................... 22 2 2 0.50 1 1
......................................................................................................GCTTGGCATCTCTTGGGGTGAG....................................................................... 22 2 2 0.50 1 1
.......................................................................................................CTTGGCATCTCTTAGAGTGAA....................................................................... 21 1 2 0.50 1 1
.......................................................................................................CTTGGCATCTCTGAGAGTGAGT...................................................................... 22 2 3 0.33 1 1
.......................................................................................................CTTGGCATCTCTTAGAGTGAAT...................................................................... 22 2 4 0.25 1 1
.......................................................................................................CTTGGCATCTCTTAGAGTGAGAAG.................................................................... 24 3 7 0.14 1 1
............................................................................................................CATCTCTTAGAGTGAGT...................................................................... 17 1 18 0.11 2 2

Anti-sense strand reads

CCGTACCACTCTCCACAAACTCATATACATTTTAACGACTGAAGTCGGTAAGACACgCgtCAtggggtAAggtCCttCACggtttgtACACCgAtCtAtttACgAACCgtAgAgAAtCtCACtCCAttACgtgttgttCAtgCtgtAtCtACCACCAggATCTCCTCCCCGACACCGGCAGACTCAGGAAGGAAC

********************************************************.......................................................................................**************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:18 PM