ID:

eca-mir-508

 Coordinate:

chrX:116765762-116765878 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

TGGAAACGCTGAATTGGATGAAAACTACATGTGTGTATTTGGGCGGAGTCACCACTCTCAGCTGGGTGTtGTGgggTtgTggtGtGGGTGTgtTTgtgtTtGtgTtttGgtTGtTTGTgtggTTTTGGtGTtGtGTttTtgtgtTgtTGGtgGtTtTtTGTGGTGGgTGTGGGGTGAGTGTATATAGCTGCATACACAGGGTTGCTCTTCCTTGAGT

*************************************************************........................................................................................******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.................................................................................................................ATTGTCACCTTTTGGAGTAGA................................................................................... 21 0 1 1690.00 1690 1690
.................................................................................................................ATTGTCACCTTTTGGAGTAG.................................................................................... 20 0 1 196.00 196 196
.................................................................................................................CTTGTCACCTTTTGGAGTAGA................................................................................... 21 1 1 91.00 91 91
................................................................................................................GATTGTCACCTTTTGGAGTAGA................................................................................... 22 0 1 63.00 63 63
.................................................................................................................ATTGTCACCTTTTGGAG....................................................................................... 17 0 3 50.33 151 151
.................................................................................................................ATTGTCACCTTTTGGAGTAGAAT................................................................................. 23 1 1 43.00 43 43
.................................................................................................................ATTGTCACCTTTTGGAGTAGAA.................................................................................. 22 1 2 28.00 56 56
................................................................................................................GATTGTCACCTTTTGGAGTAG.................................................................................... 21 0 1 22.00 22 22
............................................................................TACTCCAGAGGGTGTCATTCA........................................................................................................................ 21 0 1 12.00 12 12
.................................................................................................................ATTGTCACCTTTGGGAGTAGA................................................................................... 21 1 1 10.00 10 10
.................................................................................................................CTTGTCACCTTTTGGAGTAGAAT................................................................................. 23 2 1 7.00 7 7
.................................................................................................................ATTGTCACCTTGTGGAGTAGA................................................................................... 21 1 1 6.00 6 6
............................................................................TACTCCAGAGGGTGTCATTCAC....................................................................................................................... 22 0 1 5.00 5 5
.................................................................................................................ATTGTCACCTTTTGGAGTAGAG.................................................................................. 22 0 1 4.00 4 4
............................................................................TACTCCAGAGGGTGTCATTC......................................................................................................................... 20 0 1 3.00 3 3
.................................................................................................................ATTGTCACCTTTTGGAGTAGAGT................................................................................. 23 0 1 3.00 3 3
.........................................................TCAGCTGGGTGTAGTGCCC............................................................................................................................................. 19 0 1 3.00 3 3
............................................................................TACTCCAGAGGGTGTCATTCACA...................................................................................................................... 23 0 1 3.00 3 3
.................................................................................................................ATTGTCACCTTTAGGAGTAGA................................................................................... 21 1 1 3.00 3 3
.................................................................................................................CTTGTCACCTTTTGGAGTAG.................................................................................... 20 1 3 2.67 8 8
.................................................................................................................ATTGTCACCTTTTGGAGTAGACT................................................................................. 23 1 1 2.00 2 2
............................................................................TACTCCAGAGGGTGTCATTCAA....................................................................................................................... 22 1 1 2.00 2 2
...............................................................................................................TGATTGTCACCTTTTGGAGTAGA................................................................................... 23 0 1 2.00 2 2
.................................................................................................................TTTGTCACCTTTTGGAGTAGA................................................................................... 21 1 1 2.00 2 2
.................................................................................................................ATTGTCACCGTTTGGAGTAGA................................................................................... 21 1 1 2.00 2 2
.................................................................................................................ATTGTCACCTTTTGGAGTAGAT.................................................................................. 22 1 2 2.00 4 4
.................................................................................................................ATTGTCGCCCTTTGGAGTAGA................................................................................... 21 2 1 2.00 2 2
.................................................................................................................ATTGTCACCATTTGGAGTAGA................................................................................... 21 1 1 2.00 2 2
.................................................................................................................ATTGTCACCTTTTGGAATAGA................................................................................... 21 1 1 2.00 2 2
........................................................CTCAGCTGGGTGTAGTGCCC............................................................................................................................................. 20 0 1 2.00 2 2
.................................................................................................................ATTGTCACCTGTTGGAGTAGA................................................................................... 21 1 1 2.00 2 2
............................................................................TACTCCAGAGGGTGTCATTCAT....................................................................................................................... 22 1 1 2.00 2 2
.................................................................................................................ATTGTCACCCTTTGGAGTAGA................................................................................... 21 1 1 2.00 2 2
.................................................................................................................ATTGTCACCTTTCGGAGTAGA................................................................................... 21 1 1 2.00 2 2
.................................................................................................................ATTGTCACCTTTTGGAGTAGAC.................................................................................. 22 1 1 2.00 2 2
.................................................................................................................ATTGTCACCTTTTGGAGTAGATT................................................................................. 23 1 2 1.50 3 3
................................................................................................................GATTGTCACCTTTTGGAGTAGAA.................................................................................. 23 1 1 1.00 1 1
................................................................................................................GATTGTCACCTGTTGGAGTAG.................................................................................... 21 1 1 1.00 1 1
.................................................................................................................ATTGTAACCTTTTGGAGTAGA................................................................................... 21 1 1 1.00 1 1
.................................................................................................................ACTGTCACCTTTTGGAGTAGA................................................................................... 21 1 1 1.00 1 1
................................................................................................................GATTGTCACCTTTTGGAGTGGA................................................................................... 22 1 1 1.00 1 1
.................................................................................................................ATTGTCACCTTTTGCAGTAG.................................................................................... 20 1 1 1.00 1 1
.................................................................................................................ATTGTCACCGTTTGGAGTAG.................................................................................... 20 1 1 1.00 1 1
.................................................................................................................ATTGTCACCTTTTGCAGTAGA................................................................................... 21 1 1 1.00 1 1
............................................................................TACTCCAGAGGGTGTCATTCAG....................................................................................................................... 22 1 1 1.00 1 1
.................................................................................................................ATTGTCACCTTTTGGAGTAGAACA................................................................................ 24 2 2 1.00 2 2
.................................................................................................................ATTGTCACCTTTTGGAGTAGAAG................................................................................. 23 2 4 1.00 4 4
............................................................................TACTCCAGAGGGTGTCATTCTA....................................................................................................................... 22 2 1 1.00 1 1
.................................................................................................CATAGACTAAAGCATGATTGTCACCTTTTGGAGTAGA................................................................................... 37 0 1 1.00 1 1
.................................................................................................................ATTGTCACCTTTTGGAGTAGG................................................................................... 21 1 1 1.00 1 1
................................................................................................................GATTGTCACCTTTTGGAG....................................................................................... 18 0 2 1.00 2 2
............................................................................TACTCCAGAGGGTGTCATTCACT...................................................................................................................... 23 1 1 1.00 1 1
.................................................................................................................ATTGTCACCTTTTGGAGTAGAAC................................................................................. 23 2 2 1.00 2 2
.................................................................................................................ATTGTCACCGTTTGGAGTAGAAT................................................................................. 23 2 1 1.00 1 1
.................................................................................................................AGTGTCACCTTTTGGAGTAGA................................................................................... 21 1 1 1.00 1 1
.................................................................................................................CTTGTCACCTTTCGGAGTAGA................................................................................... 21 2 1 1.00 1 1
.................................................................................................................ATTGTCACCTTCTGGAGTAGA................................................................................... 21 1 1 1.00 1 1
.................................................................................................................ATTGTCACCTTATGGAGTAGA................................................................................... 21 1 1 1.00 1 1
................................................................................................................GATTGTCACCTTTTGGAGTAGAAAA................................................................................ 25 2 2 1.00 2 2
...............................................................................................................TGATTGTCACCTTTTGGAGTAGAAT................................................................................. 25 1 1 1.00 1 1
.................................................................................................................ATTGGCACCTTTTGGAGTAGA................................................................................... 21 1 1 1.00 1 1
................................................................................................................TATTGTCACCTTTTGGAGTAG.................................................................................... 21 1 1 1.00 1 1
.................................................................................................................ATTGTCGCCGTTTGGAGTAGA................................................................................... 21 2 2 1.00 2 2
............................................................................TACTCCAGAGGGTGTCATT.......................................................................................................................... 19 0 1 1.00 1 1
.................................................................................................................ATTATCACCTTTTGGAGTAG.................................................................................... 20 1 1 1.00 1 1
.................................................................................................................ATTGTCACCTTTTGGAGTAGAACAA............................................................................... 25 2 1 1.00 1 1
...........................................................AGCTGGGTGTAGTGCCC............................................................................................................................................. 17 0 1 1.00 1 1
............................................................................TACTCCAGAGGGTGTCATTA......................................................................................................................... 20 1 1 1.00 1 1
.................................................................................................................ATTGTCACCTTTTGGACTAGA................................................................................... 21 1 1 1.00 1 1
.................................................................................................................ATTGTCACCTGTTGGAGTAG.................................................................................... 20 1 1 1.00 1 1
................................................................................................................GATTGTCACCTTTTGGAGTAGAAT................................................................................. 24 1 1 1.00 1 1
................................................................................................................GATTGTCACCTGTTGGAGTAGA................................................................................... 22 1 1 1.00 1 1
.................................................................................................................GTTGTCACCTTTTGGAGTAGA................................................................................... 21 1 1 1.00 1 1
.................................................................................................................ATTGTCACCTTTTGGAATAG.................................................................................... 20 1 1 1.00 1 1
.................................................................................................................CTTGTCACCTTTTGGAGTAGAGT................................................................................. 23 1 1 1.00 1 1
...............................................................................................................TGATTGTCACCTTTTGGAGTAGT................................................................................... 23 1 1 1.00 1 1
.................................................................................................................ATTGTCACCTTTTGGAGTAGT................................................................................... 21 1 1 1.00 1 1
............................................................................TACTCCAGAGGGTGTCATTCAAG...................................................................................................................... 23 2 1 1.00 1 1
.................................................................................................................ATTGTCATCTTTTGGAGTAGA................................................................................... 21 1 3 0.67 2 2
.................................................................................................................ATTGTCACCTTTTGGAGTAGAAGT................................................................................ 24 3 6 0.67 4 4
.................................................................................................................ATTGTCACCTTGTGGAGTAGAA.................................................................................. 22 2 2 0.50 1 1
.................................................................................................................ATTGTCACCATTTGGAGTACA................................................................................... 21 2 4 0.50 2 2
.................................................................................................................ATTGTCACCTTTTGGAGTATA................................................................................... 21 1 2 0.50 1 1
............................................................................TACTCCAGAAGGTGTCATTCA........................................................................................................................ 21 1 2 0.50 1 1
.................................................................................................................ATTGTCACCTTTTGGAGT...................................................................................... 18 0 2 0.50 1 1
.................................................................................................................ATTGTCAACTTTTGGAGTAGA................................................................................... 21 1 2 0.50 1 1
.................................................................................................................ATTGTCACCTTTTGGAGTAGAATG................................................................................ 24 2 2 0.50 1 1
.................................................................................................................ATTGTCACCTTTTGAAGTAGA................................................................................... 21 1 2 0.50 1 1
.................................................................................................................ATTGTCGCCATTTGGAGTAGA................................................................................... 21 2 2 0.50 1 1
................................................................................................................GATTGTCACCTTTTGGAGTAGAAA................................................................................. 24 2 2 0.50 1 1
.................................................................................................................ATTGTCACCTTTTGGAGGAGA................................................................................... 21 1 2 0.50 1 1
.................................................................................................................ATTGTCACCCTTTGGAGTAG.................................................................................... 20 1 2 0.50 1 1
.................................................................................................................ATTGTCGCCGTTTGGAGTAG.................................................................................... 20 2 2 0.50 1 1
.................................................................................................................ATTGTCACTTTTTGGAGTAGA................................................................................... 21 1 2 0.50 1 1
.................................................................................................................CTTGTCACCTTTTGGAGTAGAA.................................................................................. 22 2 3 0.33 1 1
.................................................................................................................ATTGTCACCGTTTGGAGTACA................................................................................... 21 2 3 0.33 1 1
.................................................................................................................ATTGTCACCTTTTGGAGTAGAAAGA............................................................................... 25 3 3 0.33 1 1
.................................................................................................................ATTGTCACCTTTTGGAGTAT.................................................................................... 20 1 3 0.33 1 1
.................................................................................................................ATTGTCACCTTTTGGAGTAGACA................................................................................. 23 2 3 0.33 1 1
.................................................................................................................ATTGTCACCCTTTGGAGTAGAA.................................................................................. 22 2 3 0.33 1 1
.................................................................................................................ATTGTCACCTTTTGGAGTAGTA.................................................................................. 22 2 4 0.25 1 1
.................................................................................................................ATTGTCACCTTTTGGAGTAGAAGA................................................................................ 24 2 4 0.25 1 1
.................................................................................................................ATTGTCCCCGTTTGGAGTAG.................................................................................... 20 2 4 0.25 1 1
.................................................................................................................CTTGTCACCTGTTGGAGTAGA................................................................................... 21 2 4 0.25 1 1
............................................................................TACTCCAGAGGGTGTCATTCTTT...................................................................................................................... 23 3 6 0.17 1 1
.................................................................................................................ATTGTCCCCATTTGGAGTAGA................................................................................... 21 2 6 0.17 1 1
.................................................................................................................CTTGTCACCTTTTGGAGTAGATA................................................................................. 23 3 7 0.14 1 1
.................................................................................................................CTTGTCATCTTTTGGAGTAGA................................................................................... 21 2 9 0.11 1 1
.................................................................................................................CTTGTCACCTGTTGGAGTAG.................................................................................... 20 2 9 0.11 1 1
.................................................................................................................ATTGTCACCGTTTGGAG....................................................................................... 17 1 20 0.10 2 2
.................................................................................................................ATTGTCCCCATTTGGAGTAG.................................................................................... 20 2 13 0.08 1 1
.................................................................................................................GTTGTCACCTTTTGGAG....................................................................................... 17 1 20 0.05 1 1
.................................................................................................................ATTGTCACCTTTAGGAG....................................................................................... 17 1 20 0.05 1 1

Anti-sense strand reads

ACCTTTGCGACTTAACCTACTTTTGATGTACACACATAAACCCGCCTCAGTGGTGAGAGTCGACCCACAtCACgggAtgAggtCtCCCACAgtAAgtgtAtCtgAtttCgtACtAACAgtggAAAACCtCAtCtCAttAtgtgtAgtACCtgCtAtAtACACCACCgACACCCCACTCACATATATCGACGTATGTGTCCCAACGAGAAGGAACTCA

********************************************************************........................................................................................************************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:18 PM