ID:

eca-mir-507a

 Coordinate:

chrX:116755935-116756029 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

AGGCATAGCGAGGGGTGTATTGGGGTGTGTGgtGGtTgGggtggTggtGggtTGTTGTGTGgtGTGgTggtgTTgtGGttGTGggtTggtTGTGGgTtGtttTtTGtTTGGgtggTgTTtGtGTGttGTttTGgtgttgtGGTtgtTgtGTGgTGGgTCTGGGAGAGGGAATATGGCGACCTGCACACAGGTGCC

******************************************************........................................................................................***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
........................................................................................................TGATTGGCACCTCTTAGAGTGAA.................................................................... 23 0 1 102.00 102 102
........................................................................................................TGATTGGCACCTCTTAGAGTGA..................................................................... 22 0 1 101.00 101 101
........................................................................................................TGATTGGCACCTCTTAGAGTGAAT................................................................... 24 1 1 29.00 29 29
........................................................................................................TGATTGGCACCTCTTAGAGT....................................................................... 20 0 1 26.00 26 26
..........................................................................................................ATTGGCACCTCTTAGAGTGAAT................................................................... 22 1 1 18.00 18 18
........................................................................................................TGATTGGCACCTCTTAGAGTGAAA................................................................... 24 1 1 12.00 12 12
........................................................................................................TGATTGGCACCTCTTAGAGTGG..................................................................... 22 1 1 10.00 10 10
..........................................................................................................ATTGGCACCTCTTAGAGTGAA.................................................................... 21 0 1 7.00 7 7
........................................................................................................TGATTGGCACCTGTTAGAGTGAA.................................................................... 23 1 1 3.00 3 3
........................................................................................................TGATTGGCACCTCTTAGAGTGAAAA.................................................................. 25 2 1 3.00 3 3
..........................................................................................................ATTGGCACCTCTTAGAGTGAAA................................................................... 22 1 1 3.00 3 3
...................................................................................CCATCCATGTGGCTAGAAATATGATTGGCACCT............................................................................... 33 0 1 2.00 2 2
........................................................................................................TGATTGGCACCTCTTAGAGTGAAG................................................................... 24 0 1 2.00 2 2
..........................................................................................................ATTGGCACCTCTTAGAGTGAAGA.................................................................. 23 1 1 2.00 2 2
........................................................................................................TGATTGGCACCTCTTAGAGTG...................................................................... 21 0 1 2.00 2 2
........................................................................................................TGATTGGCACCTCTTAGAG........................................................................ 19 0 3 2.00 6 6
........................................................................................................TGATTGGCACCTCTTAGAGTGGA.................................................................... 23 1 1 2.00 2 2
........................................................................................................TGATTGGCACCTCTTAGAGTAA..................................................................... 22 1 1 1.00 1 1
........................................................................................................TGATTGGCACCTCTGAGAGTGAA.................................................................... 23 1 1 1.00 1 1
.....................................................................CACTTCAGGAAGTGCCATCCAAT....................................................................................................... 23 2 1 1.00 1 1
........................................................................................................TGATTGGCACCTCTTAGAGTGC..................................................................... 22 1 1 1.00 1 1
..........................................................................................................ATTGGCACCTCTTAGAGTGAAC................................................................... 22 1 1 1.00 1 1
..........................................................................................................ATTGGCACCTCTTAGAGTGAAAC.................................................................. 23 2 1 1.00 1 1
.....................................................................CACTTCAGGAAGTGCCATCCAT........................................................................................................ 22 0 1 1.00 1 1
..........................................................................................................CTTGGCACCTCTTAGAGTGAAT................................................................... 22 2 1 1.00 1 1
.........................................................................................................GATTGGCACCTCTTAGAGTGAAA................................................................... 23 1 1 1.00 1 1
.......................................................................................CCATGTGGCTAGAAATATGATTGGCACC................................................................................ 28 0 1 1.00 1 1
........................................................................................................TGATTGGCACCTCTTAGAGTGT..................................................................... 22 1 1 1.00 1 1
........................................................................................................TGATTGGCACGTCTTAGAGTGA..................................................................... 22 1 1 1.00 1 1
........................................................................................................TGATTGGCACCTCTTAGAGTGAT.................................................................... 23 1 1 1.00 1 1
........................................................................................................TGATTGGCACCTCTTAGAGTGAAC................................................................... 24 1 1 1.00 1 1
..........................................................................................................ATTGGCACCTCTTAGAGTGTAG................................................................... 22 1 1 1.00 1 1
........................................................................................................TGATTGGCACCTCTTAGAGTGGAT................................................................... 24 2 1 1.00 1 1
..........................................................................................................ATTGGCACCTCTGAGAGTGAAT................................................................... 22 2 1 1.00 1 1
.....................................................................CACTTCAGGAAGTGCCATCCATGA...................................................................................................... 24 1 1 1.00 1 1
.........................................................................................................GATTGGCACCTCTTAGAGTGA..................................................................... 21 0 1 1.00 1 1
........................................................................................................TGATTGGCACCTCTTAGAGTGAATT.................................................................. 25 1 1 1.00 1 1
.....................................................................CACTTCAGGAAGTGCCATCCATG....................................................................................................... 23 0 1 1.00 1 1
........................................................................................................TGATTGGCACCTCTGAGAGTGA..................................................................... 22 1 1 1.00 1 1
........................................................................................................TGATTGGCACCTCTTAGAGAGA..................................................................... 22 1 2 0.50 1 1
........................................................................................................TGATTGGCAGCTCTTAGAGGGA..................................................................... 22 2 2 0.50 1 1
........................................................................................................TGATTGGCAGCTCTTAGAGGG...................................................................... 21 2 3 0.33 1 1
........................................................................................................TGATTGGCACCTCTTAGAA........................................................................ 19 1 3 0.33 1 1
........................................................................................................TGATTGGCACCTCTTAGA......................................................................... 18 0 3 0.33 1 1
........................................................................................................TGATTGGCAACTCTTAGAGAGAA.................................................................... 23 2 3 0.33 1 1
...............................................................................................................CACCTCTTAGAGTGA..................................................................... 15 0 19 0.05 1 1

Anti-sense strand reads

TCCGTATCGCTCCCCACATAACCCCACACACgtCCtAgCggtggAggtCggtACAACACACgtCACgAggtgAAgtCCttCACggtAggtACACCgAtCtttAtACtAACCgtggAgAAtCtCACttCAttACgtgttgtCCAtgtAgtCACgACCgAGACCCTCTCCCTTATACCGCTGGACGTGTGTCCACGG

*****************************************************........................................................................................****************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:18 PM