ID:

eca-mir-505

 Coordinate:

chrX:111378309-111378392 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-46.0

Sense Strand Reads

ATTCACTCTTTGTCATTTGCAGCAGAAGAGCAGCCTGACCGTGGTAAATTGATGCACCCAGTGGGGGAGCCAGGAAGTATTGATGTTTCTGCCAGTTTAGCGTCAACACTTGCTGGTTTCCTCTCTGGAGCATCACCAAGTTCGTGGATTTTCATTATTTCTGACTTTTGGACTTTTGTTACTG

*************************************************((((((..((((.(((((((((((.((((.((((((((...........)))))))).)))).))))))))))).)))).))))))..*********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
....................................................................................................CGTCAACACTTGCTGGTTTCCT.............................................................. 22 0 1 34.00 34 34
....................................................................................................CGTCAACACTTGCTGGTTTCCTCT............................................................ 24 0 1 8.00 8 8
.....................................................................................................GTCAACACTTGCTGGTTTCCTCT............................................................ 23 0 1 8.00 8 8
.....................................................................................................GTCAACACTTGCTGGTTTCCT.............................................................. 21 0 1 6.00 6 6
....................................................................................................CGTCAACACTTGCTGGTTTCCTC............................................................. 23 0 1 6.00 6 6
................................................................GGGAGCCAGGAAGTATTGATGTTT................................................................................................ 24 0 1 5.00 5 5
....................................................................................................CGTCAACACTTGCTGGTTTCC............................................................... 21 0 1 4.00 4 4
................................................................GGGAGCCAGGAAGTATTGATGTT................................................................................................. 23 0 1 3.00 3 3
....................................................................................................CGTCAACACTTGCTGGTTTCCTT............................................................. 23 1 1 3.00 3 3
......................................................................................................TCAACACTTGCTGGTTTCCTCT............................................................ 22 0 1 3.00 3 3
......................................................................................................TCAACACTTGCTGGTTTCCT.............................................................. 20 0 1 3.00 3 3
.....................................................................................................GTCAACACTTGCTGGTTTCCTC............................................................. 22 0 1 3.00 3 3
....................................................................................................CGTCAACACTTGCTGGTTTCCTCTAAA......................................................... 27 3 1 2.00 2 2
.....................................................................................................GTCAACACTTGCTGGTTTCCTCC............................................................ 23 1 1 2.00 2 2
................................................................GGGAGCCAGGAAGTATTGATGT.................................................................................................. 22 0 1 2.00 2 2
......................................................................................................TCAACACTTGCTGGTTTCCTCC............................................................ 22 1 1 1.00 1 1
....................................................................................................CGTCAACACTTGCTGGTTTCCTCTTAT......................................................... 27 3 1 1.00 1 1
....................................................................................................CGTCAACACTTGCTGGTTTCCTCAT........................................................... 25 2 1 1.00 1 1
.....................................................................................................GTCAACACTTGCTGGTTTCCTCTAA.......................................................... 25 2 1 1.00 1 1
....................................................................................................CGTCAACACTTGCTGGTTTCCTCATT.......................................................... 26 2 1 1.00 1 1
....................................................................................................CGTCAACACTTGCTGGTTT................................................................. 19 0 1 1.00 1 1
.....................................................................................................GTCAACACTTGCTGGTTTCGTCT............................................................ 23 1 1 1.00 1 1
...............................................................................................CGTGGCGTCAACACTTGCTGGTTTCCT.............................................................. 27 3 1 1.00 1 1
....................................................................................................CGTCAACACTTGGTGGTTTCCT.............................................................. 22 1 1 1.00 1 1
....................................................................................................CGTCAACACTTGCTGGTTTC................................................................ 20 0 1 1.00 1 1
.....................................................................................................GTCAACACTTGCTGGTTTCCTG............................................................. 22 1 1 1.00 1 1
....................................................................................................CGTCAACACTTGCTGGTTTCCTCTAAT......................................................... 27 3 1 1.00 1 1
....................................................................................................CGTCAACACTTGCTGGTTTACT.............................................................. 22 1 1 1.00 1 1
.....................................................................................................GTCAACGCTCGCTGGTTTCATCT............................................................ 23 3 2 0.50 1 1
....................................................................................................CGTCAACACTTGCTGGTTCCCTCAT........................................................... 25 3 2 0.50 1 1
.....................................................................................................GTCAACACTTGCTGGTTTCCTTT............................................................ 23 1 3 0.33 1 1
....................................................................................................CGTCAACACTTGCTGGTTAA................................................................ 20 2 7 0.14 1 1

Anti-sense strand reads

TAAGTGAGAAACAGTAAACGTCGTCTTCTCGTCGGACTGGCACCATTTAACTACGTGGGTCACCCCCTCGGTCCTTCATAACTACAAAGACGGTCAAATCGCAGTTGTGAACGACCAAAGGAGAGACCTCGTAGTGGTTCAAGCACCTAAAAGTAATAAAGACTGAAAACCTGAAAACAATGAC

***********************************************((((((..((((.(((((((((((.((((.((((((((...........)))))))).)))).))))))))))).)))).))))))..************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:13 PM