ID:

eca-mir-503

 Coordinate:

chrX:106954617-106954687 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-62.4 -62.0 -61.9

Sense Strand Reads

CACGCAGACGGTGCCCGCCCAGGAGGGACCCGGTGCCCCGCACTCAGCCGTGCCCTAGCAGCGGGAACAGTACTGCAGTGGGCGATCGGTGCTCTGGAGTATTGTTCCTGCTGCCCGGGCAAGGCTGGGACTTCCGCACGGGCCCACCCACCAGGTAAGTGCTAGTCCAGC

****************************************..(((((((.(((((..(((((((((((((((((.(((..((((.....))))))).)))))))))))))))))..))))).)))))))....************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
................................................................................................GAGTATTGTTCCTGCTGCCCGG..................................................... 22 0 1 57.00 57 57
...............................................................................................GGAGTATTGTTCCTGCTGCCCGG..................................................... 23 0 1 36.00 36 36
................................................................................................GAGTATTGTTCCTGCTGCCCGGT.................................................... 23 1 1 26.00 26 26
................................................................................................GAGTATTGTTCCTGCTGCCCGGA.................................................... 23 1 1 25.00 25 25
...............................................................................................GGAGTATTGTTCCTGCTGCCC....................................................... 21 0 1 17.00 17 17
.......................................................TAGCAGCGGGAACAGTAA.................................................................................................. 18 1 1 16.00 16 16
.......................................................TAGCAGCGGGAACAGTACTGCAG............................................................................................. 23 0 1 9.00 9 9
.......................................................TAGCAGCGGGAACAGTACT................................................................................................. 19 0 1 8.00 8 8
.......................................................TAGCAGCGGGAACAGTACTGAAA............................................................................................. 23 2 1 7.00 7 7
.......................................................TAGCAGCGGGAACAGTAC.................................................................................................. 18 0 1 7.00 7 7
...............................................................................................GGAGTATTGTTCCTGCTGCCCGGA.................................................... 24 1 1 7.00 7 7
...............................................................................................GGAGTATTGTTCCTGCTGC......................................................... 19 0 1 7.00 7 7
...............................................................................................GGAGTATTGTTCCTGCTGCCCGGT.................................................... 24 1 1 7.00 7 7
.......................................................TAGCAGCGGGAACAGTACTG................................................................................................ 20 0 1 6.00 6 6
.......................................................TAGCAGCGGGAACAGTA................................................................................................... 17 0 1 6.00 6 6
..............................................................................................TGGAGTATTGTTCCTGCTGCCC....................................................... 22 0 1 6.00 6 6
.......................................................TAGCAGCGGGAACAGTACTGAAC............................................................................................. 23 2 1 5.00 5 5
.......................................................TAGCAGCGGGAACAGTAAT................................................................................................. 19 1 1 5.00 5 5
.......................................................TAGCAGCGGGAACAGTACTGCAGA............................................................................................ 24 1 1 4.00 4 4
................................................................................................GAGTATTGTTCCTGCTGCCCGGTT................................................... 24 2 1 4.00 4 4
.......................................................TAGCAGCGGGAACAGTACTGCA.............................................................................................. 22 0 1 4.00 4 4
................................................................................................GAGTATTGTTCCTGCTGCCCGA..................................................... 22 1 1 4.00 4 4
.......................................................TAGCAGCGGGAACAG..................................................................................................... 15 0 2 3.00 6 6
.............................................................................GTGGGCGATCGGTGCTCTGGAGTATTGTTCCTGCTGCC........................................................ 38 0 1 3.00 3 3
.......................................................TAGCAGCGGGAACAGTACTGAA.............................................................................................. 22 1 1 3.00 3 3
...............................................................................................GGAGTATTGTTCCTGCTGCC........................................................ 20 0 1 3.00 3 3
...............................................................................................GGAGTATTGTTCCTGCTGCCCGA..................................................... 23 1 1 3.00 3 3
..............................................................................................TGGAGTATTGTTCCTGCTGCC........................................................ 21 0 1 3.00 3 3
.......................................................TAGCAGCGGGAACAGTACTAGA.............................................................................................. 22 2 1 2.00 2 2
.......................................................TAGCAGCGGGAACAGTACTGA............................................................................................... 21 1 1 2.00 2 2
................................................................................................GAGTATTGTTCCTGCTGCCC....................................................... 20 0 1 2.00 2 2
...............................................................................................GGAGTATTGTTCCTGCTGCCT....................................................... 21 1 1 2.00 2 2
.............................................................................GTGGGCGATCGGTGCTCTGGAGTATTGTTCCTGCTGCCCGG..................................................... 41 0 1 2.00 2 2
.............................................................................................CTGGAGTATTGTTCCTGCTGCCCT...................................................... 24 1 1 2.00 2 2
............................................................................................TCTGGAGTATTGTTCCTGCTGCCTT...................................................... 25 2 1 2.00 2 2
.............................................................................................CTGGAGTATTGTTCCTGCTGCCT....................................................... 23 1 1 2.00 2 2
.......................................................TAGCAGCGGGAACAGTACTAAA.............................................................................................. 22 2 1 2.00 2 2
.......................................................TAGCAGCGGGAACAGTACTAA............................................................................................... 21 2 2 2.00 4 4
..............................................................................................TGGAGTATTGTTCCTGCTGCCT....................................................... 22 1 1 2.00 2 2
..............................................................................................TGGAGTATTGTTCCTGCTGC......................................................... 20 0 1 2.00 2 2
.......................................................TAGCAGCGGGAACAGTACTGCAGT............................................................................................ 24 0 1 2.00 2 2
.......................................................TAGCAGCGGGAACAGTACTGCAA............................................................................................. 23 1 1 1.00 1 1
.............................................................................GTGGGCGATCGGTGCTCTGGAGTATTGTTCCTGCTGCCC....................................................... 39 0 1 1.00 1 1
.......................................................TAGCAGCGGGAACAGTACTGAAG............................................................................................. 23 1 1 1.00 1 1
...............................................................................................GGAGTATTGTTCCTGCTGCCCGAGA................................................... 25 2 1 1.00 1 1
.......................................................TAGCAGCGGGAACAGT.................................................................................................... 16 0 1 1.00 1 1
................................................................................................GAGTATTGTTCGTGCTGCCCGG..................................................... 22 1 1 1.00 1 1
...............................................................................................GGAGTATTGTTCCTGCTGCCCGGG.................................................... 24 0 1 1.00 1 1
................................................................................................GAGTATTGTTCCTGCTGCCCGGC.................................................... 23 1 1 1.00 1 1
.......................................................TAGCAGCGGGAACAGTACTGCAGAGAA......................................................................................... 27 3 1 1.00 1 1
........................................................................................GTGCTCTGGAGTATTGTTCCT.............................................................. 21 0 1 1.00 1 1
...........................................................................................CTCTGGAGTATTGTTCCTGCTGC......................................................... 23 0 1 1.00 1 1
.......................................................TAGCAGCGGGAACAGTACG................................................................................................. 19 1 1 1.00 1 1
................................................................................................GAGTATTGTTCCTGCTGCCCGGTTT.................................................. 25 3 1 1.00 1 1
...............................................................................................GGAGTATTGTTCCTGCTGCCCCG..................................................... 23 1 1 1.00 1 1
.............................................................................................CTGGAGTATTGTTCCTGCTGCCAT...................................................... 24 2 1 1.00 1 1
..................................................................................CGATCGGTGCTCTGGAGTATTGTTCCTGCTGCCC....................................................... 34 0 1 1.00 1 1
...................................................................................................TATTGTTCCTGCTGCCCGGTAA.................................................. 22 2 1 1.00 1 1
................................................................................................GAGTATTGTTCCTGCTGCCCG...................................................... 21 0 1 1.00 1 1
..............................................................................................TGGAGTATTGTTCCTGCTGCCA....................................................... 22 1 1 1.00 1 1
................................................................................................GAGTATTGTTCGTGCTGCCCGT..................................................... 22 2 1 1.00 1 1
.......................................................TAGCAGCGGGAACAGTACTATA.............................................................................................. 22 2 1 1.00 1 1
.......................................................TAGCAGCGGGAACAGTACTAAAC............................................................................................. 23 3 1 1.00 1 1
.......................................................TAGCAGCGGGAACAGTACTGCAGTT........................................................................................... 25 1 1 1.00 1 1
...............................................................................................GGAGTATTGTTCATGCTGCCCGGA.................................................... 24 2 1 1.00 1 1
...................................CCCCGCACTCAGCCGTGCCC.................................................................................................................... 20 0 1 1.00 1 1
.......................................................TAGCAGCGGGAACAGTACTGC............................................................................................... 21 0 1 1.00 1 1
.......................................................TAGCAGCGGGAACAGTACTGAAT............................................................................................. 23 2 1 1.00 1 1
............................................................................................TCTGGAGTATTGTTCCTGCTGCCC....................................................... 24 0 1 1.00 1 1
............................................................................................TCTGGAGTATTGTTCCTGCTGCC........................................................ 23 0 1 1.00 1 1
............................................................................................TCTGGAGTATTGTTCCTGCTGCCCTT..................................................... 26 2 1 1.00 1 1
..............................................................................................TGGAGTATTGTTCCTGCTGCCCT...................................................... 23 1 1 1.00 1 1
............................................................................................TCTGGAGTATTGTTCCTGCTGCCT....................................................... 24 1 1 1.00 1 1
.............................................................................GTGGGCGATCGGTGCTCTGGAGTATTGTTCCTGC............................................................ 34 0 1 1.00 1 1
...............................................................................................GGAGTATTGTTCCTGCTGCCCG...................................................... 22 0 1 1.00 1 1
...............................................................................................GGAGTATTGTTCCTGCTGCCCTA..................................................... 23 2 1 1.00 1 1
...............................................................................................GGAGTATTGTTCCTGCTGCA........................................................ 20 1 1 1.00 1 1
...............................................................................................GGAGTATTGTTCCTGCTGCCCTCT.................................................... 24 3 1 1.00 1 1
...............................................................................................GGAGTATTGTTCCTGCTGCCCGT..................................................... 23 1 1 1.00 1 1
..............................................................................................TGGAGTATTGTTCCTGCTGCCAT...................................................... 23 2 1 1.00 1 1
.......................................................TAGCAGCGGGAACAGTAT.................................................................................................. 18 1 1 1.00 1 1
.......................................................TGGCAGCGGGAACAGTACT................................................................................................. 19 1 1 1.00 1 1
.......................................................TAGCAGCGGGAACAGTACTAAAA............................................................................................. 23 3 5 0.60 3 3
...............................................................................................GGAGTATTGTTCATGCTGCCC....................................................... 21 1 2 0.50 1 1
............................................................................................TCTGGAGTATTGTTCCTGCTGT......................................................... 22 1 2 0.50 1 1
......................................................................................................................GCAAGGCTGGGACTTCCGCAAA............................... 22 2 2 0.50 1 1
..............................................................................................TGGAGTATTGTTCCTGCTG.......................................................... 19 0 2 0.50 1 1
...............................................................................................GGAGTATTGTTCCTGCTGCCCTAT.................................................... 24 3 2 0.50 1 1
.......................................................TAGCAGCGGGAACAGTAAA................................................................................................. 19 2 20 0.50 10 10
.......................................................TAGCAGCGGGAACAGTAGT................................................................................................. 19 1 2 0.50 1 1
............................................................................................TCTGGAGTATTGTTCCTGCTGTT........................................................ 23 2 2 0.50 1 1
................................................................................................GAGTATTGTTCCTGCTGCCTGA..................................................... 22 2 3 0.33 1 1
.......................................................TAGCAGCGGGAACAGTACTAGAA............................................................................................. 23 3 3 0.33 1 1
.......................................................TAGCAGCGGGAACAGTACAA................................................................................................ 20 2 7 0.29 2 2
.......................................................TAGCAGCGGGAAGAGTACTAGA.............................................................................................. 22 3 4 0.25 1 1
........................................................AGCAGCGGGAACAGTACTAT............................................................................................... 20 2 5 0.20 1 1
.......................................................TAGCAGCGGGAACAGTAGAAC............................................................................................... 21 3 20 0.20 4 4
.......................................................TAGCAGCGGGAACAGTATTA................................................................................................ 20 2 5 0.20 1 1
.......................................................TAGCAGCGGGAACAGTAATA................................................................................................ 20 2 10 0.20 2 2
.......................................................TAGCAGCGGGAACAGTAAG................................................................................................. 19 2 20 0.15 3 3
...............................................................................................GGAGTAATGCTCCTGCTGCACG...................................................... 22 3 7 0.14 1 1
.......................................................TAGCAGCGGGAACAGTACAATA.............................................................................................. 22 3 8 0.13 1 1
........................................................AGCAGCGGGAACAGTACTAA............................................................................................... 20 2 8 0.13 1 1
.......................................................AAGCAGCGGGAACAGTACTAGA.............................................................................................. 22 3 9 0.11 1 1
.......................................................TAGCAGCGGGAACAGTACGAGA.............................................................................................. 22 3 9 0.11 1 1
.......................................................TAGCAGCGGGAACAGTAGTTAA.............................................................................................. 22 3 10 0.10 1 1
.......................................................TAGCAGCGGGAACAGTATAAC............................................................................................... 21 3 14 0.07 1 1
.......................................................TAGCAGCGGGAACAGTAGA................................................................................................. 19 2 20 0.05 1 1
.......................................................TAGCAGCGGGAAAAGTAA.................................................................................................. 18 2 20 0.05 1 1
.......................................................TAGCAGCGGGAACAGTACGAA............................................................................................... 21 3 20 0.05 1 1
.......................................................TAGCAGCGGGAACAGTAAAGA............................................................................................... 21 3 20 0.05 1 1

Anti-sense strand reads

GTGCGTCTGCCACGGGCGGGTCCTCCCTGGGCCACGGGGCGTGAGTCGGCACGGGATCGTCGCCCTTGTCATGACGTCACCCGCTAGCCACGAGACCTCATAACAAGGACGACGGGCCCGTTCCGACCCTGAAGGCGTGCCCGGGTGGGTGGTCCATTCACGATCAGGTCG

**************************************..(((((((.(((((..(((((((((((((((((.(((..((((.....))))))).)))))))))))))))))..))))).)))))))....**************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:13 PM