ID:

eca-mir-501

 Coordinate:

chrX:40074566-40074649 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature

  1. eca-mir-500-1  chrX:40073334-40073354 +
  2. eca-mir-501  chrX:40074616-40074636 +
  3. eca-mir-500-2  chrX:40075151-40075171 +
  4. eca-mir-502  chrX:40077458-40077478 +
star

Sense Strand Reads

TATGCACATACACACACATACAGGGTGCGGGTGCCCGAGTTTTCTATTCTGCTCTCCCTCTCTCATCCTTCGTCCCTGGGTGAGAGTGCTTTCCGAATGCAATGCACCTGGGCAAGGATTCCAGAGGGCGAGGCTCCTCTGCGTGGAGAAGGACAGAGGATCTGTATATCACCTCTCAGCTGCC

************************************************...(((.((((((...((((((.((((..(((((....(((.........)))...)))))))))))))))...)))))).)))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
....................................................................................................AATGCACCTGGGCAAGGATTC............................................................... 21 0 4 75.50 302 302
...............................................................CATCCTTCGTCCCTGGGTGAGA................................................................................................... 22 0 1 7.00 7 7
....................................................................................................CATGCACCTGGGCAAGGATTC............................................................... 21 1 4 5.25 21 21
...............................................................CATCCTTCGTCCCTGGGTGAG.................................................................................................... 21 0 1 5.00 5 5
.....................................................................................................ATGCACCTGGGCAAGGATTC............................................................... 20 0 4 4.75 19 19
....................................................................................................AATGCACCTGGGCAAGGATTCC.............................................................. 22 0 3 4.67 14 14
.....................................................................................................ATGCACCTGGGCAAGGATTCC.............................................................. 21 0 3 4.33 13 13
...............................................................CATCCTTCGTCCCTGGGTGAGAGT................................................................................................. 24 0 1 4.00 4 4
....................................................................................................AATGCACCTGGGCAAGGATTCT.............................................................. 22 1 4 3.25 13 13
...............................................................CATCCTTCGTCCCTGGGTGAGAGTGC............................................................................................... 26 0 1 3.00 3 3
....................................................................................................AATGCACCTGGGCAAGGATT................................................................ 20 0 4 1.75 7 7
....................................................................................................AATGCACCTGGGCAAGGATTCAA............................................................. 23 1 2 1.50 3 3
.....................................................................................................ATGCACCTGGGCAAGGATTCCT............................................................. 22 1 3 1.00 3 3
...............................................................CATCCTGCGTCCCTGGGTGAGAGTGTT.............................................................................................. 27 2 1 1.00 1 1
....................................................................................................AATGCACCTGGGAAAGGATTC............................................................... 21 1 4 1.00 4 4
...............................................................CATCCTTCGTCCCTGGCTGAGAGA................................................................................................. 24 2 1 1.00 1 1
...............................................................GATCCTTCGTCCCTGGGTGAGA................................................................................................... 22 1 1 1.00 1 1
...............................................................CATCCTTCGTCCCTGGGTG...................................................................................................... 19 0 1 1.00 1 1
...............................................................CATCCTTCGTCCCTGGGTGAGAG.................................................................................................. 23 0 1 1.00 1 1
....................................................................................................AATGCACCTGGGCAAGGATTCAAG............................................................ 24 1 1 1.00 1 1
...............................................................CATCCTTCGTCCCTGGGTGAGAA.................................................................................................. 23 1 1 1.00 1 1
...............................................................CATCCTTCGTCCCTGGG........................................................................................................ 17 0 1 1.00 1 1
...............................................................CATCCTTCGTCCCTGGGTGAGAGA................................................................................................. 24 1 1 1.00 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCAGAA.......................................................... 25 1 1 1.00 1 1
...............................................................CATCCTTCGTCCCTGGGTGAA.................................................................................................... 21 1 1 1.00 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCGAAG.......................................................... 25 2 3 0.67 2 2
....................................................................................................AATGCACCTGGGCAAGGATAC............................................................... 21 1 5 0.60 3 3
.....................................................................................................ATGCACCTGGGCAAGGATTCT.............................................................. 21 1 4 0.50 2 2
.....................................................................................................ATGCACCTGGGCAAGGATTCAA............................................................. 22 1 2 0.50 1 1
....................................................................................................AATGCACCTGGGCAAGGATGC............................................................... 21 1 4 0.50 2 2
.....................................................................................................ATGCACCTGGGCAAGGATTCCAAC........................................................... 24 2 3 0.33 1 1
.....................................................................................................CTGCACCTGGGCAAGGATTCAA............................................................. 22 2 3 0.33 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCGAAGT......................................................... 26 3 3 0.33 1 1
...............................................................CATCCTTCGTCCCTGGGTGAAT................................................................................................... 22 2 3 0.33 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCC............................................................. 22 1 3 0.33 1 1
....................................................................................................AATGCACCTGGGCAAGGATTCCTT............................................................ 24 2 3 0.33 1 1
....................................................................................................AATGCACCTGGGCAAGGATTCCT............................................................. 23 1 3 0.33 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCGG............................................................ 23 1 3 0.33 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCGTA........................................................... 24 2 3 0.33 1 1
....................................................................................................AATGCACCTGGGCAAGGATG................................................................ 20 1 4 0.25 1 1
....................................................................................................AATGCACCTGGGCAATGATTC............................................................... 21 1 4 0.25 1 1
.....................................................................................................ATGCACCTGGGCAAGGAT................................................................. 18 0 4 0.25 1 1
....................................................................................................AGTGCACCTGGGCAAGGATTC............................................................... 21 1 4 0.25 1 1
....................................................................................................AATGCAACTGGGCAAGGATTC............................................................... 21 1 4 0.25 1 1
....................................................................................................AATGCACCTGGGCAAGGATCC............................................................... 21 1 4 0.25 1 1
....................................................................................................AATGCACCTGGGCAAGGATTT............................................................... 21 1 4 0.25 1 1
....................................................................................................CATGCACCTGGGCAAGGATTA............................................................... 21 2 4 0.25 1 1
.....................................................................................................ATGCACCTGGGCAAGGATT................................................................ 19 0 4 0.25 1 1
....................................................................................................AATGCACCTGGGCAGGGATTC............................................................... 21 1 4 0.25 1 1
...........................................................................................................CTGGGCAAGGATTCC.............................................................. 15 0 15 0.20 3 3
.....................................................................................................ATGCACCTGGGCAAGGA.................................................................. 17 0 5 0.20 1 1
....................................................................................................AATGCACCTCGGCAAGGATAC............................................................... 21 2 5 0.20 1 1
....................................................................................................CATGCACCTGGGCAAGGATTCT.............................................................. 22 2 6 0.17 1 1
....................................................................................................AATACACCTGGGCAAGGATTCT.............................................................. 22 2 6 0.17 1 1
..........................................................................................................CCTGGGCAAGGATTCC.............................................................. 16 0 7 0.14 1 1
....................................................................................................AATGCACCTAGGCAAGGATGC............................................................... 21 2 7 0.14 1 1
....................................................................................................AATGCACCCTGGCAAGGATTC............................................................... 21 2 7 0.14 1 1
..........................................................................................................CCTGGGCAAGGATTC............................................................... 15 0 12 0.08 1 1

Anti-sense strand reads

ATACGTGTATGTGTGTGTATGTCCCACGCCCACGGGCTCAAAAGATAAGACGAGAGGGAGAGAGTAGGAAGCAGGGACCCACTCTCACGAAAGGCTTACGTTACGTGGACCCGTTCCTAAGGTCTCCCGCTCCGAGGAGACGCACCTCTTCCTGTCTCCTAGACATATAGTGGAGAGTCGACGG

************************************************...(((.((((((...((((((.((((..(((((....(((.........)))...)))))))))))))))...)))))).)))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:11 PM