ID:

eca-mir-500-1

 Coordinate:

chrX:40073284-40073367 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.4 -35.0 -34.6
mature

  1. eca-mir-500-1  chrX:40073334-40073354 +
  2. eca-mir-501  chrX:40074616-40074636 +
  3. eca-mir-500-2  chrX:40075151-40075171 +
  4. eca-mir-502  chrX:40077458-40077478 +
star

  1. eca-mir-500-1  chrX:40073296-40073318 +
  2. eca-mir-500-2  chrX:40075113-40075135 +

Sense Strand Reads

TCTGTGAAAAACAGCAAGTTCTGTTAAACCCATGCAGGGCCTTCTGCTCTGCTCCCCCTCTCTAATCCTTGCTACCTGGGTGAGAGTGTTGTCTGAATGCAATGCACCTGGGCAAGGATTCCGAGAGCGAGAGCTTCATCTTCATTTAGGACAGAGCACCTTTCTATCCTCCTtccatccgttc

***********************************************...((((...(((((.(((((((((...(((((((...(((((.....)))))....))))))))))))))))..)))))...))))..************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
....................................................................................................AATGCACCTGGGCAAGGATTC............................................................... 21 0 4 75.50 302 302
.....................................................................................................ATGCACCTGGGCAAGGATTCCGA............................................................ 23 0 2 30.00 60 60
..............................................................TAATCCTTGCTACCTGGGTGAGA................................................................................................... 23 0 2 12.00 24 24
.....................................................................................................ATGCACCTGGGCAAGGATTCCGAA........................................................... 24 1 2 9.00 18 18
..............................................................TAATCCTTGCTACCTGGGTGAGAGT................................................................................................. 25 0 2 7.50 15 15
.....................................................................................................ATGCACCTGGGCAAGGATTCCGAAA.......................................................... 25 1 2 7.50 15 15
.....................................................................................................ATGCACCTGGGCAAGGATTCCGAT........................................................... 24 1 2 7.00 14 14
..............................................................TAATCCTTGCTACCTGGGTGAGAGTGT............................................................................................... 27 0 1 6.00 6 6
.....................................................................................................ATGCACCTGGGCAAGGATTCCG............................................................. 22 0 2 6.00 12 12
....................................................................................................CATGCACCTGGGCAAGGATTC............................................................... 21 1 4 5.25 21 21
.....................................................................................................ATGCACCTGGGCAAGGATTC............................................................... 20 0 4 4.75 19 19
....................................................................................................AATGCACCTGGGCAAGGATTCC.............................................................. 22 0 3 4.67 14 14
.....................................................................................................ATGCACCTGGGCAAGGATTCCGAAT.......................................................... 25 2 2 4.50 9 9
..............................................................TAATCCTTGCTACCTGGGTGAG.................................................................................................... 22 0 2 4.50 9 9
.....................................................................................................ATGCACCTGGGCAAGGATTCC.............................................................. 21 0 3 4.33 13 13
....................................................................................................AATGCACCTGGGCAAGGATTCCG............................................................. 23 0 2 4.00 8 8
.....................................................................................................ATGCACCTGGGCAAGGATTCCGTT........................................................... 24 2 2 3.50 7 7
....................................................................................................AATGCACCTGGGCAAGGATTCT.............................................................. 22 1 4 3.25 13 13
..............................................................TAATCCTTGCTACCTGGGTGAGT................................................................................................... 23 1 2 3.00 6 6
..............................................................TAATCCTTGCTACCTGGGTGA..................................................................................................... 21 0 2 3.00 6 6
.....................................................................................................CTGCACCTGGGCAAGGATTCCGA............................................................ 23 1 2 2.50 5 5
....................................................................................................AATGCACCTGGGCAAGGATT................................................................ 20 0 4 1.75 7 7
.....................................................................................................CTGCACCTGGGCAAGGATTCCGAA........................................................... 24 2 2 1.50 3 3
.....................................................................................................ATGCACCTGGGCAAGGATTCCGTAA.......................................................... 25 2 2 1.50 3 3
.....................................................................................................ATGCACCTGGGCAAGGATTCCGT............................................................ 23 1 2 1.50 3 3
.....................................................................................................CTGCACCTGGGCAAGGATTCCG............................................................. 22 1 2 1.50 3 3
........................................................................................TTGTCTGAATGCAATGCACGTGGGCAAGGATTCCGA............................................................ 36 1 1 1.00 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCT............................................................. 22 1 3 1.00 3 3
..............................................................TAATCCTTGCTACCTGGGTGAGAGTGTTT............................................................................................. 29 1 2 1.00 2 2
.....................................................................................................ATGCACCTGGGCAAGGATTCCGAGA.......................................................... 25 0 2 1.00 2 2
.....................................................................................................ATGCACCTGGGCAAGGATTCTGA............................................................ 23 1 3 1.00 3 3
....................................................................................................AATGCACCTGGGCAAGGATTCCGA............................................................ 24 0 2 1.00 2 2
........................................................................................TTGTCTGAATGCAATGCACCTGGGCAAGGATTCCG............................................................. 35 0 1 1.00 1 1
..............................................................TAATCCTTGCTACCTGGGTGAGAGTGTTGA............................................................................................ 30 1 1 1.00 1 1
.....................................................................................................CTGCACCTGGGCAAGGATTCCGAT........................................................... 24 2 2 1.00 2 2
.....................................................................................................ATGCACCTGGGCAAGGATTGCGA............................................................ 23 1 2 1.00 2 2
.....................................................................................................ATGCACCTGGGCAAGGATTCCGATT.......................................................... 25 2 2 1.00 2 2
....................................................................................................AATGCACCTGGGAAAGGATTC............................................................... 21 1 4 1.00 4 4
.....................................................................................................CTGCACCTGGGCAAGGATTCCGAAT.......................................................... 25 3 2 1.00 2 2
..............................................................TAATCCTTGCTACCTGGGTGAGAG.................................................................................................. 24 0 2 1.00 2 2
.....................................................................................................ATGCACCTGGGCAAGGATTCCGAAG.......................................................... 25 2 3 0.67 2 2
....................................................................................................AATGCACCTGGGCAAGGATAC............................................................... 21 1 5 0.60 3 3
..............................................................TAATCCTTGCTACCTGGGTGAGAA.................................................................................................. 24 1 2 0.50 1 1
..............................................................TAATCCTTGCTACCTGGGTGAAAGT................................................................................................. 25 1 2 0.50 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCCA............................................................ 23 1 2 0.50 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCGATTT......................................................... 26 3 2 0.50 1 1
..............................................................TAATCCTTGCTACCTGGGTGAGAGTGA............................................................................................... 27 1 2 0.50 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCT.............................................................. 21 1 4 0.50 2 2
.....................................................................................................ATGCACCTGGGCAAGGATTCCAAGAA......................................................... 26 2 2 0.50 1 1
....................................................................................................AATGCACCTGGGCAAGGATGCCGAT........................................................... 25 2 2 0.50 1 1
..............................................................TAATCCTTGCTACCTGGGTGAGAGTG................................................................................................ 26 0 2 0.50 1 1
.....................................................................................................CTGCACCTGGGCAAGGATTCCGAAA.......................................................... 25 2 2 0.50 1 1
..............................................................TAATCCTTGCTACCTGGGTAT..................................................................................................... 21 2 2 0.50 1 1
....................................................................................................AATGCACCTGGGCAAGGATTCCGAA........................................................... 25 1 2 0.50 1 1
..............................................................TAATCCTTGTTACCTGGGTGTGA................................................................................................... 23 2 2 0.50 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCGAGAA......................................................... 26 1 2 0.50 1 1
.....................................................................................................ATGCACCTGGGAAAGGATTACG............................................................. 22 2 2 0.50 1 1
....................................................................................................AGTGCACCTGGGCAAGGATTCCG............................................................. 23 1 2 0.50 1 1
...............................................................AATCCTTGCTACCTGGGTGAGAA.................................................................................................. 23 1 2 0.50 1 1
..............................................................TAATCCTTGCTACCTGGGTGACA................................................................................................... 23 1 2 0.50 1 1
..............................................................TAATCCTTGCTACCTGGGTGGGAGT................................................................................................. 25 1 2 0.50 1 1
.....................................................................................................CTGCACCTGGGGAAGGATTCCGA............................................................ 23 2 2 0.50 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCGATA.......................................................... 25 1 2 0.50 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCGTAAT......................................................... 26 3 2 0.50 1 1
..............................................................TAATCCTTGCTACCTGGGTGATA................................................................................................... 23 1 2 0.50 1 1
.....................................................................................................ATGCACCTGGTCAAGGATTCCGAAT.......................................................... 25 3 2 0.50 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCGAAAGA........................................................ 27 2 2 0.50 1 1
....................................................................................................AATGCATCTGGGCAAGGATTCCGA............................................................ 24 1 2 0.50 1 1
...............................................................AATCCTTGCTACCTGGGTGAGAG.................................................................................................. 23 0 2 0.50 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCGAGT.......................................................... 25 1 2 0.50 1 1
...............................................................AATCCTTGCTACCTGGGTGAGAGT................................................................................................. 24 0 2 0.50 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCTAT........................................................... 24 2 2 0.50 1 1
....................................................................................................AATGCACCTGGGCAAGGATTCCGAAT.......................................................... 26 2 2 0.50 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTGCGAA........................................................... 24 2 2 0.50 1 1
....................................................................................................AATGCACCTGGGCAAGGATTCCGAGA.......................................................... 26 0 2 0.50 1 1
...............................................................AATCCTTGCTACCTGGGTGAGGGT................................................................................................. 24 1 2 0.50 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCGAAAAA........................................................ 27 3 2 0.50 1 1
..............................................................TAATCCTTGCTACCTGGGTCAGA................................................................................................... 23 1 2 0.50 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCGTTT.......................................................... 25 3 2 0.50 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCTA............................................................ 23 1 2 0.50 1 1
.....................................................................................................ATGCACATGAGCAAGGATTCCGA............................................................ 23 2 2 0.50 1 1
...........................................................................................................CTGGGCAAGGATTCCGAT........................................................... 18 1 2 0.50 1 1
.....................................................................................................ATGCACCTGGGCCAGGATTCCGA............................................................ 23 1 2 0.50 1 1
....................................................................................................AATGCACCTGGGCAAGGATGC............................................................... 21 1 4 0.50 2 2
....................................................................................................CATGCACCTGGGCAAGGATTCCGA............................................................ 24 1 2 0.50 1 1
..............................................................TAATCCTTGCTACCTGGGTGAGAGTGAAAT............................................................................................ 30 3 2 0.50 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCTTTA.......................................................... 25 3 2 0.50 1 1
..............................................................TAATCCGTGGTACCTGGGTGAG.................................................................................................... 22 2 2 0.50 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCAAC........................................................... 24 2 3 0.33 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCC............................................................. 22 1 3 0.33 1 1
....................................................................................................AATGCACCTGGGCAAGGATTCCT............................................................. 23 1 3 0.33 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCGAAGT......................................................... 26 3 3 0.33 1 1
....................................................................................................AATGCACCTGGGCAAGGATTCCTT............................................................ 24 2 3 0.33 1 1
....................................................................................................AATGCACCTGGGCAAGGATTCTG............................................................. 23 1 3 0.33 1 1
..............................................................TAATCCTTGCTACCTGGGTGAGAGAAG............................................................................................... 27 3 3 0.33 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCGTA........................................................... 24 2 3 0.33 1 1
.....................................................................................................ATGCACCTGGGCAAGGATTCCGG............................................................ 23 1 3 0.33 1 1
..............................................................TAATCCTTGCTAGCTGGGTGAC.................................................................................................... 22 2 4 0.25 1 1
....................................................................................................AGTGCACCTGGGCAAGGATTC............................................................... 21 1 4 0.25 1 1
....................................................................................................AATGCACCTGGGCAAGGATCC............................................................... 21 1 4 0.25 1 1
....................................................................................................CATGCACCTGGGCAAGGATTA............................................................... 21 2 4 0.25 1 1
....................................................................................................AATGCACCTGGGCAAGGATG................................................................ 20 1 4 0.25 1 1
....................................................................................................AATGCACCTGGGCAGGGATTC............................................................... 21 1 4 0.25 1 1
....................................................................................................AATGCACCTGGGCAAGGATTT............................................................... 21 1 4 0.25 1 1
.....................................................................................................ATGCACCTGGGCAAGGAT................................................................. 18 0 4 0.25 1 1
....................................................................................................AATGCAACTGGGCAAGGATTC............................................................... 21 1 4 0.25 1 1
....................................................................................................AATGCACCTGGGCAATGATTC............................................................... 21 1 4 0.25 1 1
.....................................................................................................ATGCACCTGGGCAAGGATT................................................................ 19 0 4 0.25 1 1
....................................................................................................AATGCACCTCGGCAAGGATAC............................................................... 21 2 5 0.20 1 1
..............................................................TAATCCTTGCTAGCTGGGTGG..................................................................................................... 21 2 5 0.20 1 1
...........................................................................................................CTGGGCAAGGATTCC.............................................................. 15 0 15 0.20 3 3
.....................................................................................................ATGCACCTGGGCAAGGA.................................................................. 17 0 5 0.20 1 1
....................................................................................................CATGCACCTGGGCAAGGATTCT.............................................................. 22 2 6 0.17 1 1
....................................................................................................AATACACCTGGGCAAGGATTCT.............................................................. 22 2 6 0.17 1 1
....................................................................................................AATGCACCTAGGCAAGGATGC............................................................... 21 2 7 0.14 1 1
....................................................................................................AATGCACCCTGGCAAGGATTC............................................................... 21 2 7 0.14 1 1
..........................................................................................................CCTGGGCAAGGATTCC.............................................................. 16 0 7 0.14 1 1
..........................................................................................................CCTGGGCAAGGATTC............................................................... 15 0 12 0.08 1 1

Anti-sense strand reads

AGACACTTTTTGTCGTTCAAGACAATTTGGGTACGTCCCGGAAGACGAGACGAGGGGGAGAGATTAGGAACGATGGACCCACTCTCACAACAGACTTACGTTACGTGGACCCGTTCCTAAGGCTCTCGCTCTCGAAGTAGAAGTAAATCCTGTCTCGTGGAAAGATAGGAGGAtGGTtGGgttG

************************************************...((((...(((((.(((((((((...(((((((...(((((.....)))))....))))))))))))))))..)))))...))))..*********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:12 PM