ID:

eca-mir-495

 Coordinate:

chr24:42906084-42906165 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.1 -30.7 -30.7

Sense Strand Reads

GCCTGCGGGAGGTGAGCGAATGCAGACGCGTGCCCGCCGGCGCTAGTCTCTGGTCCCTGAAAAGAAGTTGCCCATGTTATTTTCGCTTGATATGTGACGAAACAAACATGGTGCACTTCTTTTTCGGTATCAAATCTCATCCTGAAGAGATCCCTGGCCCCACTGGAACTTTGGGGAAGGGC

************************************************..((((.((.((((((((((.(((((((((..(((((............)))))..))))))).)))))))))))).)).))))....********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...................................................................................................AAACAAACATGGTGCACTTCTT............................................................. 22 0 1 61.00 61 61
...................................................................................................AAACAAACATGGTGCACTTCTTT............................................................ 23 0 1 18.00 18 18
....................................................................................................AACAAACATGGTGCACTTCTTT............................................................ 22 0 1 16.00 16 16
....................................................................................................AACAAACATGGTGCACTTCTT............................................................. 21 0 1 8.00 8 8
...................................................................................................AAACAAACATGGTGCACTTCTTA............................................................ 23 1 1 2.00 2 2
....................................................................................................AACAAACATGGTGCACTTCTTC............................................................ 22 1 1 2.00 2 2
...................................................................................................CAACAAACATGGTGCACTTCTTT............................................................ 23 1 1 2.00 2 2
..................................................................................................CAAACAAACATGGTGCACTTCTTT............................................................ 24 1 1 2.00 2 2
...................................................................................................CAACAAACATGGTGCACTTCTT............................................................. 22 1 1 2.00 2 2
...................................................................................................AAACAAACATGGTGCAATTCTTT............................................................ 23 1 1 1.00 1 1
...................................................................................................AAACAAACATGGTGCACTTCTC............................................................. 22 1 1 1.00 1 1
.....................................................................................................ACAAACATGGTGCACTTCTTT............................................................ 21 0 1 1.00 1 1
...................................................................................................AAACAAACATGGTGCACTTCTTCT........................................................... 24 1 1 1.00 1 1
....................................................................................................AACAAACATGGTGCACTTCG.............................................................. 20 1 1 1.00 1 1
...............................................................GAAGTTGCCCATGTTATTTTCG................................................................................................. 22 0 1 1.00 1 1
.....................................................................................................ACAAACATGGTGGACTTCTTT............................................................ 21 1 1 1.00 1 1
...................................................................................................AAACAAACAGGGTGCACTTGTT............................................................. 22 2 1 1.00 1 1
....................................................................................................AACAAACATGGTGCACTTCTTG............................................................ 22 1 1 1.00 1 1
.........................................................................................................................TTTCGGTATCAAATCTCATCCTGAAGAGATCCGTGGCA....................... 38 2 1 1.00 1 1
....................................................................................................AACAAACATGGTGCACTTCTTTTT.......................................................... 24 0 1 1.00 1 1
...................................................................................................AAACAAACATGGTGCACTTCT.............................................................. 21 0 1 1.00 1 1
...................................................................................................AAACAAACATGGTGCACTTCTTTTAT......................................................... 26 2 1 1.00 1 1
...................................................................................................AAACAAACATGATGCACTTCTT............................................................. 22 1 1 1.00 1 1
.....................................................................................................ACAAACATGGTGCACTTCTTTT........................................................... 22 0 1 1.00 1 1
....................................................................................................CACAAACATGGTGCACTTCTTT............................................................ 22 1 1 1.00 1 1
...................................................................................................AAACAAACATGGTGCAATTCTT............................................................. 22 1 1 1.00 1 1
...................................................................................................AAACAAACATGGTTCACTTCTT............................................................. 22 1 1 1.00 1 1
....................................................................................................CACAAACATGGTGCACTTCT.............................................................. 20 1 2 0.50 1 1
...................................................................................................CAACAAACATGGTGCACTTCTTC............................................................ 23 2 2 0.50 1 1
...................................................................................................AAACAAGCAGGGTGCACTTATTT............................................................ 23 3 7 0.14 1 1

Anti-sense strand reads

CGGACGCCCTCCACTCGCTTACGTCTGCGCACGGGCGGCCGCGATCAGAGACCAGGGACTTTTCTTCAACGGGTACAATAAAAGCGAACTATACACTGCTTTGTTTGTACCACGTGAAGAAAAAGCCATAGTTTAGAGTAGGACTTCTCTAGGGACCGGGGTGACCTTGAAACCCCTTCCCG

**********************************************..((((.((.((((((((((.(((((((((..(((((............)))))..))))))).)))))))))))).)).))))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:54 AM