ID:

eca-mir-488

 Coordinate:

chr5:12172407-12172489 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.2 -29.2

Sense Strand Reads

TTGGCGTTTCCTCCTAAGGAAGAAAGAAGAGCCTAGAGTGGGAGCTTTCAGAGAATCATCTCTCCCAGATAATGGCACTCTCAAACAAGTTTCCAAGTTGTTTGAAAGGCTATTTCTTGGTCAGAAGACTCTCCATTCCTTCTGGAAGCCTCAGGAGTCATATTTTGCTGTTTAGACATAGGA

************************************************..((((.((.(((..((.(((.((((((.((.((((((((.((...)).)))))))).))))))))))).))..))).)).))))....********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................................................................................................TTGAAAGGCTATTTCTTGGTC............................................................. 21 0 1 32.00 32 32
.....................................................................................................TTGAAAGGCTATTTCTTGGTCT............................................................ 22 1 1 25.00 25 25
...............................................................CCCAGATAATGGCACTCTCAAAC................................................................................................. 23 0 1 6.00 6 6
.....................................................................................................TTGAAAGGCTATTTCTTGGT.............................................................. 20 0 1 2.00 2 2
...............................................................CCCAGATAATGGCACTCTCA.................................................................................................... 20 0 1 1.00 1 1
.....................................................................................................TTGAGAGGCTATTTCTTGGTC............................................................. 21 1 1 1.00 1 1
...............................................................CCCAGATAATGGCACTCTCAAACA................................................................................................ 24 0 1 1.00 1 1
.....................................................................................................TTGAAAGGCTATTTCTTGGTCA............................................................ 22 0 1 1.00 1 1
......................................................................................................TGAAAGGCTATTTCTTGGTC............................................................. 20 0 1 1.00 1 1
.....................................................................................................TTGAAAGGCTATTTCTTGGTA............................................................. 21 1 2 1.00 2 2
.....................................................................................................TTGAAAGGCTATTTCTTGGCC............................................................. 21 1 1 1.00 1 1
...............................................................CCCAGATAATGGCACTCTCAAAA................................................................................................. 23 1 1 1.00 1 1
...............................................................CCCAGATAATGGCACTCTCAAA.................................................................................................. 22 0 1 1.00 1 1
...............................................................CCCAGATAATGGCACTCTCAA................................................................................................... 21 0 1 1.00 1 1
....................................................................................................TTTGAAAGGCTATTTCTTGGTC............................................................. 22 0 1 1.00 1 1
.....................................................................................................TTGAAAGGCTATTTCTTGGTAA............................................................ 22 1 2 0.50 1 1
.....................................................................................................TTGAAAGGCTATTTCTTGGTG............................................................. 21 1 2 0.50 1 1
...............................................................CTCAGATAATGGCACTCTCAT................................................................................................... 21 2 8 0.13 1 1
.....................................................................................................TTGAAAGGCTATTTCTTGGAA............................................................. 21 2 12 0.08 1 1

Anti-sense strand reads

AACCGCAAAGGAGGATTCCTTCTTTCTTCTCGGATCTCACCCTCGAAAGTCTCTTAGTAGAGAGGGTCTATTACCGTGAGAGTTTGTTCAAAGGTTCAACAAACTTTCCGATAAAGAACCAGTCTTCTGAGAGGTAAGGAAGACCTTCGGAGTCCTCAGTATAAAACGACAAATCTGTATCCT

**********************************************..((((.((.(((..((.(((.((((((.((.((((((((.((...)).)))))))).))))))))))).))..))).)).))))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:02 PM