ID:

eca-mir-450c

 Coordinate:

chrX:106948953-106949041 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.4 -38.5

Sense Strand Reads

tttgTTTttTtGTGGTTTtTgTgTGtGTTGTGGgtTttTttGTGtTCAAAGAAAGATGCTCAACTATTTTTGCGATGTGTTCCTAATACGTAATATAAATGTATTGGGAACATTTTGCATTCATAGTTTTGTATCAATAATATGGAAAGAAGGCTAGGAGGAAGTATACCAAAGTCTATCAAAGAAAGA

***********************************......((...........(((((..((((((...(((((.(((((((((((((((.......))))))))))))))).)))))...))))))..))))).................))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...................................................................TTTTGCGATGTGTTCCTAATAC.................................................................................................... 22 0 1 719.00 719 719
...................................................................TTTTGCGATGTGTTCCTAATACT................................................................................................... 23 1 1 235.00 235 235
...................................................................TTTTGCGATGTGTTCCTAAT...................................................................................................... 20 0 2 162.50 325 325
...................................................................TTTTGCGATGTGTTCCTAATA..................................................................................................... 21 0 2 99.50 199 199
...................................................................TTTTGCGATGTGTTCCTAATAA.................................................................................................... 22 1 2 38.50 77 77
...................................................................TTTTGCGATGTGTTCCTAATACG................................................................................................... 23 0 1 22.00 22 22
...................................................................TTTTGCGATGTGTTCCTAATACA................................................................................................... 23 1 1 22.00 22 22
...................................................................TTTTGCGATGTGTTCCTAATACC................................................................................................... 23 1 1 10.00 10 10
...................................................................TTTTGCGATGTGTTCCTAAAA..................................................................................................... 21 1 2 9.00 18 18
...................................................................TTTTGCGATGTGTTCCTAATT..................................................................................................... 21 1 2 8.00 16 16
...................................................................TTTTGCGATGTGTTCCTAATG..................................................................................................... 21 1 2 7.50 15 15
...................................................................TTTTGCGATGTGTTCCTAATAAA................................................................................................... 23 2 2 6.00 12 12
...................................................................TTTTGCGATGTGTTCCTAATACGT.................................................................................................. 24 0 1 6.00 6 6
...................................................................TTTTGCGATGTGTTCCTAAA...................................................................................................... 20 1 2 5.50 11 11
...................................................................TTTTGCGATGTGTTCCAAATAC.................................................................................................... 22 1 1 5.00 5 5
...................................................................TTTTGCGATGTGTTCCTAAAAC.................................................................................................... 22 1 1 5.00 5 5
...................................................................TTTTGCGATGTGTTCCTAA....................................................................................................... 19 0 2 4.50 9 9
...................................................................TTTTGCGATGTGTTCCT......................................................................................................... 17 0 2 4.50 9 9
...................................................................TTTTGCGATGTGTTCCTAATAG.................................................................................................... 22 1 2 4.00 8 8
...................................................................TTTTGCGATGTGTTCCTAAGAC.................................................................................................... 22 1 1 4.00 4 4
...................................................................TTTTGCGATGTGTTCCTAAG...................................................................................................... 20 1 2 3.00 6 6
...................................................................TTTTGCGATGTGTTCCTAAGA..................................................................................................... 21 1 2 3.00 6 6
...................................................................TTTTGCGATGTGTTCCTAATAGT................................................................................................... 23 2 2 2.00 4 4
...................................................................TTTTGCGATGTGATCCTAATAC.................................................................................................... 22 1 1 2.00 2 2
...................................................................TTTTGCGATGTGTTGCGAATACT................................................................................................... 23 3 1 2.00 2 2
...................................................................TTTTGCGATGTGTTGCGAATAC.................................................................................................... 22 2 1 2.00 2 2
...................................................................TTTTGTGATGTGTTCCTAATAC.................................................................................................... 22 1 1 2.00 2 2
...................................................................TTTTGCGATGTGTTCCTAAC...................................................................................................... 20 1 2 2.00 4 4
...................................................................TTTTGCGATGTGTTCCTAAAG..................................................................................................... 21 2 4 1.50 6 6
...................................................................TTTTGCGATGTGTTCCTAATAAT................................................................................................... 23 2 2 1.50 3 3
...................................................................TTTTGCGATGTGTTCCTGAAA..................................................................................................... 21 2 5 1.20 6 6
...................................................................TTTTGCGATGTGGTCCTAATAC.................................................................................................... 22 1 1 1.00 1 1
...................................................................TTTTGCGATGTGTTGCTAATACA................................................................................................... 23 2 1 1.00 1 1
...................................................................TTTTGCGATGTGGTCCTAATA..................................................................................................... 21 1 2 1.00 2 2
...................................................................TTTTGCGATGTGGTCCTAATACT................................................................................................... 23 2 1 1.00 1 1
......................................................................................................ATTGGGAACATTTTGCATTCATT................................................................ 23 1 1 1.00 1 1
...................................................................TTTTGCGATGTGTTCC.......................................................................................................... 16 0 2 1.00 2 2
...................................................................TTTTGCGATGTGTTCCGAATACA................................................................................................... 23 2 1 1.00 1 1
...................................................................TTTTGCGATGTGTTCCTAATACGA.................................................................................................. 24 1 1 1.00 1 1
...................................................................TTTTGCGATGTGTTCCTAAAAA.................................................................................................... 22 2 3 1.00 3 3
...................................................................TTTTGCGATGTGGTCCTAAT...................................................................................................... 20 1 2 1.00 2 2
...................................................................TTTTGCGATGTGGTCCTAATAA.................................................................................................... 22 2 2 1.00 2 2
...................................................................TTTTGCGATGTGTTCCTAAAACT................................................................................................... 23 2 2 1.00 2 2
...................................................................TTTTGCGATGTGATCCTAATACT................................................................................................... 23 2 1 1.00 1 1
....................................................................TTTGCGATGTGTTCCTAATAC.................................................................................................... 21 0 1 1.00 1 1
...................................................................TTTTGCGATGTGGTCCTAATACA................................................................................................... 23 2 1 1.00 1 1
...................................................................TTTTGCGATGTGTTCCTAACAC.................................................................................................... 22 1 1 1.00 1 1
...................................................................TTTTGCGATGTGTTGCTAATACT................................................................................................... 23 2 1 1.00 1 1
...................................................................TTTTGCGATATGTTCCTAAAAC.................................................................................................... 22 2 1 1.00 1 1
...................................................................TTTTGCGGTGTGTTCCTAATACT................................................................................................... 23 2 1 1.00 1 1
...................................................................TTTTGCGATGTGTTCCGAATAC.................................................................................................... 22 1 1 1.00 1 1
...................................................................TTTTGCGATGTGTTCCGAATACT................................................................................................... 23 2 1 1.00 1 1
...................................................................TTTTGCGATGTGTTCCTAATACTA.................................................................................................. 24 2 1 1.00 1 1
...................................................................TTTTGCGATGTGTTGCTAATAC.................................................................................................... 22 1 1 1.00 1 1
...................................................................TTTTGCGATGTGTTCCTAATACCT.................................................................................................. 24 1 1 1.00 1 1
...................................................................TTTTGCGATGTGTTCTTAATA..................................................................................................... 21 1 2 1.00 2 2
...................................................................TTTTGCGATGTGTTCCTAAAACG................................................................................................... 23 1 1 1.00 1 1
...................................................................TTTTGCGAAGTGTTCCTAATAC.................................................................................................... 22 1 1 1.00 1 1
...................................................................TTTTGCCATGTGTTCCTAAGAC.................................................................................................... 22 2 1 1.00 1 1
...................................................................TTTTGCGTTGTGTTCCTAATAC.................................................................................................... 22 1 1 1.00 1 1
...................................................................TTTTGCGATATGTTCCTAAGAC.................................................................................................... 22 2 1 1.00 1 1
...................................................................TTTTGCGATGTGGTGCTAATAC.................................................................................................... 22 2 1 1.00 1 1
...................................................................TTTTGCGATGTGTTTCTAATAC.................................................................................................... 22 1 1 1.00 1 1
...................................................................TTTTGCGATGTGTTCCTAAAT..................................................................................................... 21 2 8 0.88 7 7
...................................................................TTTTGCGATGTGTTCCTAT....................................................................................................... 19 1 5 0.60 3 3
...................................................................TTTTGCAATCTGTTCCTAATAC.................................................................................................... 22 2 2 0.50 1 1
...................................................................TTTTGCGATGTGGTGCTAATACT................................................................................................... 23 3 2 0.50 1 1
...................................................................TTTTGCGATGTGTTCCTAATAAG................................................................................................... 23 1 2 0.50 1 1
...................................................................TTTTGCGATGTGTTCCTAATAGA................................................................................................... 23 2 2 0.50 1 1
...................................................................TTTTGCGATCTGTTCCTAAT...................................................................................................... 20 1 2 0.50 1 1
...................................................................TTTTGCGATGTGTTCCTAAGAA.................................................................................................... 22 2 2 0.50 1 1
...................................................................TTTTGCGATGTCTTCCTAAT...................................................................................................... 20 1 2 0.50 1 1
...................................................................TTTTGCGATGTGTTCCGAATA..................................................................................................... 21 1 2 0.50 1 1
...................................................................TTTTGCGATGTGTTCCTAATAAC................................................................................................... 23 2 2 0.50 1 1
...................................................................TTTTGCGATGTGTTCCTATAA..................................................................................................... 21 2 4 0.50 2 2
...................................................................TTTTGCGATGTGTTCCTA........................................................................................................ 18 0 2 0.50 1 1
....................................................................TTTGCGATGTGTTCCTAAT...................................................................................................... 19 0 2 0.50 1 1
...................................................................GTTTGCGATGTGTTCCTAATA..................................................................................................... 21 1 2 0.50 1 1
...................................................................TTTTGCGATGGGTTCCTAATA..................................................................................................... 21 1 2 0.50 1 1
...................................................................TTTTGCGATGTGATCCTAAT...................................................................................................... 20 1 2 0.50 1 1
...................................................................TTTTGCGATGGGTTCCTAAT...................................................................................................... 20 1 2 0.50 1 1
...................................................................TTTTGCAATGTGTTCCTAATAC.................................................................................................... 22 1 2 0.50 1 1
...................................................................TTTTGCGATGTGTTCCCAATA..................................................................................................... 21 1 2 0.50 1 1
...................................................................TCTTGCGATGTGTTCCTAAT...................................................................................................... 20 1 2 0.50 1 1
...................................................................TTTTGCGATGTGTTCCTAATGA.................................................................................................... 22 2 3 0.33 1 1
...................................................................TTTTGCGATGTGTTCCCAATAA.................................................................................................... 22 2 3 0.33 1 1
...................................................................TTTTGCCATCTGTTCCTAATAC.................................................................................................... 22 2 3 0.33 1 1
...................................................................TTTTGCGATGTGTTCCTTA....................................................................................................... 19 1 3 0.33 1 1
...................................................................TTTTGCGATGTATTCCTAAT...................................................................................................... 20 1 3 0.33 1 1
...................................................................TTTTGCGATGTGTTC........................................................................................................... 15 0 4 0.25 1 1
...................................................................TTTTGCGATGTGTTCCTAAAAG.................................................................................................... 22 2 4 0.25 1 1
...................................................................TTTTGCGATGTGTTCCTAACT..................................................................................................... 21 2 4 0.25 1 1
..................................................................TTTCTGTGATGTGTTCCTAATA..................................................................................................... 22 2 4 0.25 1 1
...................................................................TTTTGCGATGTGTTCCTACG...................................................................................................... 20 2 5 0.20 1 1
...................................................................TGTTGCGATGTGTTCCTAAGA..................................................................................................... 21 2 5 0.20 1 1
...................................................................TTTTGCCATATGTTCCTAATAC.................................................................................................... 22 2 5 0.20 1 1
...................................................................TTTTGCGATGTGTTCCTAAGT..................................................................................................... 21 2 6 0.17 1 1
...................................................................TTTTGCGATTTGTTCCTAAAACC................................................................................................... 23 3 6 0.17 1 1
...................................................................TTTTGCGATGTGTTCCTAATGAA................................................................................................... 23 3 9 0.11 1 1
...................................................................TTTTGCGATGTGGTCCTAAG...................................................................................................... 20 2 10 0.10 1 1
...................................................................TTTTGTGATGTGTTCCTAATAAA................................................................................................... 23 3 20 0.05 1 1

Anti-sense strand reads

tttgAAAttAtCACCAAAtAgAgACtCAACACCgtAttAttCACtAGTTTCTTTCTACGAGTTGATAAAAACGCTACACAAGGATTATGCATTATATTTACATAACCCTTGTAAAACGTAAGTATCAAAACATAGTTATTATACCTTTCTTCCGATCCTCCTTCATATGGTTTCAGATAGTTTCTTTCT

***********************************......((...........(((((..((((((...(((((.(((((((((((((((.......))))))))))))))).)))))...))))))..))))).................))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:13 PM