ID:

eca-mir-412

 Coordinate:

chr24:42935784-42935863 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.8 -36.6 -36.4

Sense Strand Reads

TCGGAGGCCGTGGCACCTCGGGGAAGAACGTCGGTATCAGCACCGCTCCGGGGTACAGGAGGGATGGTCGACCAGTTGGAAAGTAATTGTTTCTAATGTACTTCACCTGGTCCACTAGCCGTCCGTACCCACCGCAGCCTGCGGGCCCGCGGGCCTGGGCCAAGCTGCCCACTCCTCGGC

*************************************************.((((((.(((.((.((((.((((((.(((..((((((((....)))).))))))).)))))).)))).)).)))))))))...*********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
................................................................TGGTCGACCAGTTGGAAAGTAAT............................................................................................. 23 0 1 212.00 212 212
................................................................TGGTCGACCAGTTGGAAAGT................................................................................................ 20 0 1 127.00 127 127
................................................................TGGTCGACCAGTTGGAAAGTA............................................................................................... 21 0 1 26.00 26 26
................................................................TGGTCGACCAGTTGGAAAGAAAT............................................................................................. 23 1 1 5.00 5 5
................................................................TGGTCGACCAGTTGGAAAGTAA.............................................................................................. 22 0 1 3.00 3 3
................................................................TGGTCGACCAGTTGGAAAGTAGT............................................................................................. 23 1 1 3.00 3 3
................................................................TGGTCGACCAGTTGGAAAG................................................................................................. 19 0 1 3.00 3 3
................................................................TGGTCGACCAGTTGGAAAGTAATT............................................................................................ 24 0 1 2.00 2 2
................................................................TGGTCGACCAGTGGGAAAGTAAT............................................................................................. 23 1 1 2.00 2 2
....................................................................................................CTTCACCTGGTCCACTAGCCT........................................................... 21 1 1 2.00 2 2
................................................................GGGTCGACCAGTTGGAAAGTAAT............................................................................................. 23 1 1 1.00 1 1
...............................................................ATGGTCGACCAGTTGGAAAGT................................................................................................ 21 0 1 1.00 1 1
...............................................................CTGGTCGACCAGTTGGAAAGT................................................................................................ 21 1 1 1.00 1 1
................................................................TGGTCGACCAGTTTGAAAGTAAT............................................................................................. 23 1 1 1.00 1 1
...............................................................ATGGTCGACCAGTTGGAAAGTA............................................................................................... 22 0 1 1.00 1 1
................................................................TGGTCGACCAGTTGGACAGTAAT............................................................................................. 23 1 1 1.00 1 1
................................................................TGGTCGACCAGGTGGAAAGTAAT............................................................................................. 23 1 1 1.00 1 1
................................................................TGGTCGACCGGTTGGAAAGTAA.............................................................................................. 22 1 1 1.00 1 1
................................................................TGGTCGACCAGTTGGAAAA................................................................................................. 19 1 1 1.00 1 1
....................................................................................................CTTCACCTGGTCCACTAG.............................................................. 18 0 1 1.00 1 1
................................................................TGGTCGACCAGGTGGAAAGTAGT............................................................................................. 23 2 1 1.00 1 1
................................................................TGGTCGACCAGTTGGAAAGTT............................................................................................... 21 1 1 1.00 1 1
................................................................TGGTCGACCGGTTGGAAAGTAAT............................................................................................. 23 1 1 1.00 1 1
................................................................TGGTCGACCAGTTGGAAAGGAAT............................................................................................. 23 1 1 1.00 1 1
................................................................TGGTCGACCAGTTGGAAAGTAT.............................................................................................. 22 1 1 1.00 1 1
................................................................TGGTCGACCAGTTGGA.................................................................................................... 16 0 1 1.00 1 1
................................................................TGGTCGACCGGTTGGAAAGT................................................................................................ 20 1 1 1.00 1 1
................................................................TGGTCGACCAGTTGGAGAGT................................................................................................ 20 1 1 1.00 1 1
................................................................TGGTCGACCAGTTGGAAAGAAATTT........................................................................................... 25 2 1 1.00 1 1
..................................................................................................TACTTCACCTGGTCCACTAGCC............................................................ 22 0 1 1.00 1 1
................................................................TGGTCGACCAGTTGGAGAGTAAT............................................................................................. 23 1 1 1.00 1 1
................................................................TGGTCGACCAGGTGGAAAGT................................................................................................ 20 1 1 1.00 1 1
................................................................TGGTCGACCAGTTGGAAAGCAA.............................................................................................. 22 1 1 1.00 1 1
....................................................................................................CTTCACCTGGTCCACTAGCCGT.......................................................... 22 0 1 1.00 1 1
................................................................TGGTCGACCAGTTGGAAAGTAATTGTTTCT...................................................................................... 30 0 1 1.00 1 1
................................................................TGGTCGACCAATTGGAAAGT................................................................................................ 20 1 1 1.00 1 1
................................................................TGGTCGACCAGTTGGAAAGC................................................................................................ 20 1 1 1.00 1 1
................................................................TGGTCGACCAGTTGGAAAGA................................................................................................ 20 1 2 0.50 1 1
................................................................TGGTCGGCCAGTTGGAAAGGA............................................................................................... 21 2 2 0.50 1 1
................................................................TGGTCGACCAGTTGGCAAGT................................................................................................ 20 1 2 0.50 1 1
................................................................TGGTCGACCGGTTGGAAAGG................................................................................................ 20 2 3 0.33 1 1

Anti-sense strand reads

AGCCTCCGGCACCGTGGAGCCCCTTCTTGCAGCCATAGTCGTGGCGAGGCCCCATGTCCTCCCTACCAGCTGGTCAACCTTTCATTAACAAAGATTACATGAAGTGGACCAGGTGATCGGCAGGCATGGGTGGCGTCGGACGCCCGGGCGCCCGGACCCGGTTCGACGGGTGAGGAGCCG

***********************************************.((((((.(((.((.((((.((((((.(((..((((((((....)))).))))))).)))))).)))).)).)))))))))...************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:55 AM