ID:

eca-mir-3959

 Coordinate:

chr24:42921540-42921650 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.3 -30.2

Sense Strand Reads

AGGACAAACCGGCACCTGGAGATGTGCTCCTACAGGACTCCAACCCGAGAGCCGAGTGTTGTCCATGATAGGGGAATGGATGGTTGATCAGAGAACATACATTTTATCAATGATGTATGTCAACTGATCCACAGTCCCTACCTATCCAGAGACTTCTCAGGACAGACTCCGGGAGAAGAGGAGGTGGCTTCCTTAGCCCTGTAGTACTTGG

******************************************************************((((((.....((((.((.((((((...(((((((((........)))))))))...)))))).)).))))...))))))....************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.................................................................................GGTTGATCAGAGAACATACATT............................................................................................................ 22 0 1 819.00 819 819
.................................................................................GGTTGATCAGAGAACATACAT............................................................................................................. 21 0 1 182.00 182 182
.................................................................................................................TGTATGTCAACTGATCCACAGT............................................................................ 22 0 1 72.00 72 72
.................................................................................GGTTGATCAGAGAACATACA.............................................................................................................. 20 0 1 47.00 47 47
...................................................................................................................TATGTCAACTGATCCACAGTC........................................................................... 21 0 1 32.00 32 32
...................................................................................................................TATGTCAACTGATCCACAGTCT.......................................................................... 22 1 1 28.00 28 28
.................................................................................GGTTGATCAGAGAACATACATTA........................................................................................................... 23 1 1 28.00 28 28
.................................................................................GGTTGATCAGAGAACATAC............................................................................................................... 19 0 1 23.00 23 23
................................................................................TGGTTGATCAGAGAACATACA.............................................................................................................. 21 0 1 23.00 23 23
...................................................................................................................TATGTCAACTGATCCACAGT............................................................................ 20 0 1 20.00 20 20
.................................................................................................................TGTATGTCAACTGATCCACAGA............................................................................ 22 1 1 11.00 11 11
.................................................................................GGTTGATCAGAGAACATACATTT........................................................................................................... 23 0 1 9.00 9 9
.................................................................................................................TGTATGTCAACTGATCCACAG............................................................................. 21 0 1 9.00 9 9
................................................................................TGGTTGATCAGAGAACATACT.............................................................................................................. 21 1 1 7.00 7 7
................................................................................TGGTTGATCAGAGAACATACAT............................................................................................................. 22 0 1 7.00 7 7
.................................................................................GGTTGATCAGAGAACATACAA............................................................................................................. 21 1 1 6.00 6 6
...................................................................................................................TATGTCAACTGATCCACAGTCA.......................................................................... 22 1 1 6.00 6 6
.................................................................................GGTTGATCAGAGAACATACT.............................................................................................................. 20 1 1 6.00 6 6
.................................................................................GGTTGATCAGAGAACATACATA............................................................................................................ 22 1 1 6.00 6 6
.................................................................................GGTTGATCAGAGAACATACATG............................................................................................................ 22 1 1 5.00 5 5
................................................................................TGGTTGATCAGAGAACATAC............................................................................................................... 20 0 1 5.00 5 5
.................................................................................................................TGTATGTCAACTGATCCACA.............................................................................. 20 0 1 5.00 5 5
................................................................................TGGTTGATCAGAGAACATACATT............................................................................................................ 23 0 1 4.00 4 4
.................................................................................GGTTGATCAGAGAACATACGTT............................................................................................................ 22 1 1 3.00 3 3
.................................................................................GGTTGATCAGAGAACATACTTT............................................................................................................ 22 1 1 3.00 3 3
.................................................................................................................TGTATGTCAACTGATCCACAGTAA.......................................................................... 24 2 1 3.00 3 3
.................................................................................GGTTGATCAGAGAACAGACATT............................................................................................................ 22 1 1 2.00 2 2
.................................................................................GGTTGATCAGAGAACTTACATT............................................................................................................ 22 1 1 2.00 2 2
.................................................................................GGTTGATCAGAGCACATACATT............................................................................................................ 22 1 1 2.00 2 2
.................................................................................GGTTGATCAGAAAACATACAT............................................................................................................. 21 1 1 2.00 2 2
.................................................................................................................TGTATGTCGACTGATCCACAGT............................................................................ 22 1 1 2.00 2 2
.................................................................................................................TGTATGTCAACTGATCCACAGTA........................................................................... 23 1 1 2.00 2 2
.................................................................................................................TGTATGTCAACTGATCGACAGT............................................................................ 22 1 1 2.00 2 2
.................................................................................GGTTGATCAGAGGACATACATT............................................................................................................ 22 1 1 2.00 2 2
...................................................................................................................TATGTAAACTGATCCACAGT............................................................................ 20 1 1 1.00 1 1
.................................................................................GGTTGATCAGAGAACATACATTG........................................................................................................... 23 1 1 1.00 1 1
.................................................................................GGTTGATCCGAGAACATACATT............................................................................................................ 22 1 1 1.00 1 1
.................................................................................................................TGTATGTCAACTGATCCACAGC............................................................................ 22 1 1 1.00 1 1
................................................................................TGGTTGATCGGAGAACATAAATT............................................................................................................ 23 2 1 1.00 1 1
...................................................................................................................TATGTCAACTGATCCAC............................................................................... 17 0 1 1.00 1 1
.................................................................................................................TGTATGTCAACTGATCCACAGTT........................................................................... 23 1 1 1.00 1 1
...................................................................................................................TATGTCAACTGATCCACAGA............................................................................ 20 1 1 1.00 1 1
.................................................................................AGTTGATCAGAGAACATACATT............................................................................................................ 22 1 1 1.00 1 1
...................................................................................................................TATGTCAACTGATCCACAGTCG.......................................................................... 22 1 1 1.00 1 1
.................................................................................GGTTGATCAGAGGACATACATG............................................................................................................ 22 2 1 1.00 1 1
.................................................................................GGTTGATCAGAGAACATACGT............................................................................................................. 21 1 1 1.00 1 1
.................................................................................GGTTGATCAGAGAACATACAAG............................................................................................................ 22 2 2 1.00 2 2
.................................................................................GGTTGATCAGAGGACATACATTA........................................................................................................... 23 2 1 1.00 1 1
.................................................................................GGTTGATCAGAGAACAT................................................................................................................. 17 0 1 1.00 1 1
.................................................................................GGTTGATCAGAGAACAAACAT............................................................................................................. 21 1 1 1.00 1 1
...................................................................................................................TATGTCAACTGATCCACAG............................................................................. 19 0 1 1.00 1 1
.................................................................................................................TGTATGTCTACTGATCCACAGT............................................................................ 22 1 1 1.00 1 1
.................................................................................GGTTGATCAGTGAACATACATT............................................................................................................ 22 1 1 1.00 1 1
.................................................................................GGTTAATCAGAGAACATACATT............................................................................................................ 22 1 1 1.00 1 1
.................................................................................GGTTGACCAAAGAACATACATT............................................................................................................ 22 2 1 1.00 1 1
.................................................................................GGTTGATCAGGGAACATACATT............................................................................................................ 22 1 1 1.00 1 1
.................................................................................GGTTGATCAGAGGACATACAT............................................................................................................. 21 1 1 1.00 1 1
.................................................................................GGTTGATCAGAGAACAAACATT............................................................................................................ 22 1 1 1.00 1 1
...................................................................................................................TATGTCAACTGAGCCACAGTC........................................................................... 21 1 1 1.00 1 1
.................................................................................GGTTGGTCAGAGAACATACATT............................................................................................................ 22 1 1 1.00 1 1
.................................................................................GCTTGATCAGAGAACATACATT............................................................................................................ 22 1 1 1.00 1 1
.................................................................................GGTTGATCAGAGAACATACATTTTATCAATGA.................................................................................................. 32 0 1 1.00 1 1
.................................................................................GGTTGATCAGAGAACATACATTC........................................................................................................... 23 1 1 1.00 1 1
.................................................................................GGTTGATCAGAGAACATACATTTT.......................................................................................................... 24 0 1 1.00 1 1
................................................................................TGGTTGATCAGGGAACATACA.............................................................................................................. 21 1 1 1.00 1 1
.................................................................................................................TGTATGTCAACTGATCCACAGG............................................................................ 22 1 1 1.00 1 1
.................................................................................................................TGTATGTCAACTGATCCACGGT............................................................................ 22 1 1 1.00 1 1
.................................................................................GGTTGATCAGAGAACACACATT............................................................................................................ 22 1 1 1.00 1 1
.................................................................................GGTTGATCAGAGAACATTCATT............................................................................................................ 22 1 1 1.00 1 1
.................................................................................GGTTGATCAGAGAACATACAAT............................................................................................................ 22 1 1 1.00 1 1
.................................................................................................................TGTATGTCAACTGATCCATAGT............................................................................ 22 1 1 1.00 1 1
................................................................................TGGTTGATCAGAGAACATACAA............................................................................................................. 22 1 1 1.00 1 1
.................................................................................GGTTGATCAGAGAACATACCTT............................................................................................................ 22 1 1 1.00 1 1
.................................................................................GGTTGATCAAAGAACATACATT............................................................................................................ 22 1 1 1.00 1 1
...................................................................................................................TATGTCAACTGATCTACAGTCT.......................................................................... 22 2 3 0.67 2 2
.................................................................................GGTTGATCAGAGAACATACATGA........................................................................................................... 23 2 2 0.50 1 1
.................................................................................................................TGTATGTCAGCTGATCCACTGT............................................................................ 22 2 2 0.50 1 1
.................................................................................GGTTGATCAGAGAACATACATC............................................................................................................ 22 1 2 0.50 1 1
.................................................................................GGTTGATCAGAGAACATACATTAA.......................................................................................................... 24 2 2 0.50 1 1
.................................................................................GGTTGATCAGAGAACATACATAA........................................................................................................... 23 2 2 0.50 1 1
.................................................................................GGTTGATCAGAGAAGAGACATT............................................................................................................ 22 2 2 0.50 1 1
.................................................................................GGTTGATCAGAGAAC................................................................................................................... 15 0 2 0.50 1 1
................................................................................TGGTTGATCAGAGAACATACATTTTATTTT..................................................................................................... 30 3 2 0.50 1 1
.................................................................................GGTTGAGCACAGAACATACATT............................................................................................................ 22 2 3 0.33 1 1
.................................................................................GGTTGATCAGAAAACATACATA............................................................................................................ 22 2 3 0.33 1 1
.................................................................................GGTTGAGCAGAGAACATACGT............................................................................................................. 21 2 4 0.25 1 1
.................................................................................GGTTGATCACAGAACATACG.............................................................................................................. 20 2 4 0.25 1 1
.................................................................................GGTTGATCAGAGAACAAACAA............................................................................................................. 21 2 8 0.13 1 1

Anti-sense strand reads

TCCTGTTTGGCCGTGGACCTCTACACGAGGATGTCCTGAGGTTGGGCTCTCGGCTCACAACAGGTACTATCCCCTTACCTACCAACTAGTCTCTTGTATGTAAAATAGTTACTACATACAGTTGACTAGGTGTCAGGGATGGATAGGTCTCTGAAGAGTCCTGTCTGAGGCCCTCTTCTCCTCCACCGAAGGAATCGGGACATCATGAACC

*************************************************************((((((.....((((.((.((((((...(((((((((........)))))))))...)))))).)).))))...))))))....****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:55 AM