ID:

eca-mir-3958

 Coordinate:

chr24:42908032-42908174 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.2

Sense Strand Reads

GCCTCAACTCCCACCATCCGTTTCCTTTGCAGGAGGATGCTCTGGCAGCCGGCGGAGAAACAGGGTCACAGAAGCTGGTCTGAGATGTTCGAAAGGAGGTTGTCCGTGATGTATTTGCTTTGTTTGTGGCAGATATTGCACGGTTGATCTCTTTTCATCATCAAATGCCTTCTCGAAGGACTTGCTGCGCGGTGTTGGGTTCGGGAGTCGGTGTGAGTGTTGGCCCCTCTGAGGGTGTGGGAG

*********************************************************************************..((((...(((((((((((..(((((..(((((((((........)))))))))..)))))..)))))))))))..)))).....**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................................................................................................AGATATTGCACGGTTGATCTCT........................................................................................... 22 0 1 641.00 641 641
..................................................................................................................................AGATATTGCACGGTTGATCTC............................................................................................ 21 0 1 99.00 99 99
..................................................................................................................................CGATATTGCACGGTTGATCTCT........................................................................................... 22 1 1 40.00 40 40
..................................................................................................................................AGATATTGTACGGTTGATCTCT........................................................................................... 22 1 1 15.00 15 15
..................................................................................................................................AGATATTGCACGGTTGATCTCG........................................................................................... 22 1 1 7.00 7 7
................................................................................................AGGTTGTCCGTGATGTATTTGC............................................................................................................................. 22 0 1 5.00 5 5
.................................................................................................................................CAGATATTGCACGGTTGATCTC............................................................................................ 22 0 1 4.00 4 4
..................................................................................................................................AGATATTGCACGGTTGATCTCA........................................................................................... 22 1 1 4.00 4 4
.................................................................................................................................CAGATATTGCACGGTTGATCTCT........................................................................................... 23 0 1 4.00 4 4
..................................................................................................................................AGATATTGCACGGTTGATCTCC........................................................................................... 22 1 1 3.00 3 3
..................................................................................................................................CGATATTGCACGGTTGATCTC............................................................................................ 21 1 1 3.00 3 3
..................................................................................................................................AGATATTGCACGGTTGATCACT........................................................................................... 22 1 1 2.00 2 2
..................................................................................................................................AGATATTGCACGGTTGATCT............................................................................................. 20 0 1 2.00 2 2
..................................................................................................................................AGATATTGTACGGTTGATCT............................................................................................. 20 1 1 2.00 2 2
..................................................................................................................................AGATATTGCACGGTTGAT............................................................................................... 18 0 1 2.00 2 2
..................................................................................................................................AGATATTGCGCGGTTGATCACT........................................................................................... 22 2 1 2.00 2 2
..................................................................................................................................AGATATTGCACGATTGATCTC............................................................................................ 21 1 1 1.00 1 1
..................................................................................................................................AGATATTGCACGGTAGATCTCT........................................................................................... 22 1 1 1.00 1 1
..................................................................................................................................AGATATTGCTCGGTTGATCACT........................................................................................... 22 2 1 1.00 1 1
..................................................................................................................................AGATATGGCGCGGTTGATCTCT........................................................................................... 22 2 1 1.00 1 1
..................................................................................................................................GGATATTGCACGGTTGATCTCT........................................................................................... 22 1 1 1.00 1 1
..................................................................................................................................AGATATTGCCCGGTTGATCACT........................................................................................... 22 2 1 1.00 1 1
................................................................................................CGGTTGTCCGTGATGTATTTGC............................................................................................................................. 22 1 1 1.00 1 1
..................................................................................................................................AGATATTGCACGGTTGATCGC............................................................................................ 21 1 1 1.00 1 1
..................................................................................................................................CGATATTGCACGGTTGATCTCC........................................................................................... 22 2 1 1.00 1 1
..................................................................................................................................CGATATTGCACGGTTGATCTCG........................................................................................... 22 2 1 1.00 1 1
................................................................................................AGGTTGGCCGTGATGTATTTGCT............................................................................................................................ 23 1 1 1.00 1 1
..................................................................................................................................AGATATTGCACGGTTGATCGCT........................................................................................... 22 1 1 1.00 1 1
.................................................................................................................................CAGATATTGCACGGTTGATC.............................................................................................. 20 0 1 1.00 1 1
..................................................................................................................................AGATATTGCACGGTTGATCTCTT.......................................................................................... 23 0 1 1.00 1 1
..................................................................................................................................AGATATTGCACGATTGATCTCT........................................................................................... 22 1 1 1.00 1 1
................................................................................................AGGTTGTCCGTGATGTATTTGCT............................................................................................................................ 23 0 1 1.00 1 1
..................................................................................................................................AGATATTGCACGGTTGGTCTCT........................................................................................... 22 1 1 1.00 1 1
..................................................................................................................................AGATATCGCACGGTTGATCTCT........................................................................................... 22 1 1 1.00 1 1
..................................................................................................................................AGATATTGCACGGTTGATCTTT........................................................................................... 22 1 1 1.00 1 1
..................................................................................................................................AGATATTGCACAGTTGATCTCT........................................................................................... 22 1 1 1.00 1 1
..................................................................................................................................AGATATAGCGCGGTTGATCTCT........................................................................................... 22 2 1 1.00 1 1
..................................................................................................................................AGATATTGCACGGCTGATCTC............................................................................................ 21 1 1 1.00 1 1
................................................................................................AGGTTGTCCGTGATGTATTTG.............................................................................................................................. 21 0 1 1.00 1 1
..................................................................................................................................AGATATTGCACGGTGGGTCTC............................................................................................ 21 2 2 0.50 1 1
..................................................................................................................................AGATATTGCACGGTAGGTCTCT........................................................................................... 22 2 2 0.50 1 1
..................................................................................................................................CGATATTGCACGATTGATCTCT........................................................................................... 22 2 2 0.50 1 1
..................................................................................................................................AGATATTGCACGATTGATCACT........................................................................................... 22 2 2 0.50 1 1
..................................................................................................................................AGATATGGCGCGGTTGATCACT........................................................................................... 22 3 2 0.50 1 1
..................................................................................................................................AGATATTGTACGGTTGAT............................................................................................... 18 1 3 0.33 1 1
..................................................................................................................................AGATATTGCGCGGTTGATCCT............................................................................................ 21 3 6 0.17 1 1
..................................................................................................................................AGATATTGTACGGTTGTTCTCC........................................................................................... 22 3 12 0.08 1 1

Anti-sense strand reads

CGGAGTTGAGGGTGGTAGGCAAAGGAAACGTCCTCCTACGAGACCGTCGGCCGCCTCTTTGTCCCAGTGTCTTCGACCAGACTCTACAAGCTTTCCTCCAACAGGCACTACATAAACGAAACAAACACCGTCTATAACGTGCCAACTAGAGAAAAGTAGTAGTTTACGGAAGAGCTTCCTGAACGACGCGCCACAACCCAAGCCCTCAGCCACACTCACAACCGGGGAGACTCCCACACCCTC

****************************************************************************..((((...(((((((((((..(((((..(((((((((........)))))))))..)))))..)))))))))))..)))).....********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:54 AM