ID:

eca-mir-380

 Coordinate:

chr24:42897592-42897652 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

TGAGGAAAGAGACGCCGGTTCTGACATCAGCCCTTTCCACGGTACCTGAAAAGACGGTTGACCATAGAGCATGCGCTGTCTCTAGGTCGTATGTAATATGGTCCACGTCTTCTCAATATCAAATTCAGTCGCAGAGGACATCCCAGAGGCAAAACCAACTT

**************************************..((((..(((.((((((...(((((((..(((((((((.......)).)))))))..)))))))..)))))).))).)))).....************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.........................................................................................TATGTAATATGGTCCACGTCT................................................... 21 0 1 501.00 501 501
.........................................................................................TATGTAATATGGGCCACGTCT................................................... 21 1 1 4.00 4 4
.........................................................................................TATGTAATATGGTCCACGTAT................................................... 21 1 1 4.00 4 4
.........................................................................................TATGTAATATGGTCCACGTCTT.................................................. 22 0 1 4.00 4 4
.........................................................................................TATGTAATATGGTCCACGTGT................................................... 21 1 1 4.00 4 4
.........................................................................................TATGTAATATGGTCCACGTC.................................................... 20 0 1 3.00 3 3
.........................................................................................TATGTAATATGGTCCACGTCTGA................................................. 23 2 1 2.00 2 2
.....................................................ACGGTTGACCATAGAGCATGC....................................................................................... 21 0 1 2.00 2 2
.........................................................................................TATGTAATATGGTCCACGTCTTGGAA.............................................. 26 3 1 1.00 1 1
.........................................................................................TATGTAATATGGACCACGTCT................................................... 21 1 1 1.00 1 1
.........................................................................................TATGTAATATGGTGCACGTCT................................................... 21 1 1 1.00 1 1
.....................................................ACGGTTGACCATAGAGCAT......................................................................................... 19 0 1 1.00 1 1
.........................................................................................TATGTAATATGGTCCACGTCTAG................................................. 23 2 1 1.00 1 1
.........................................................................................TATGTAATATGATCCACGTCT................................................... 21 1 1 1.00 1 1
.........................................................................................TATGTAATATGGTCCAAGTCT................................................... 21 1 1 1.00 1 1
.........................................................................................TATGTAATATGGTCCACGTCTG.................................................. 22 1 1 1.00 1 1
.........................................................................................TGTGTAATATGGTCCACGTCT................................................... 21 1 1 1.00 1 1
..........................................................................................ATGTAATATGGTCCACGTCT................................................... 20 0 1 1.00 1 1
.....................................................ACGGTTGACCATAGAGCATGCGT..................................................................................... 23 1 1 1.00 1 1
.........................................................................................TATGTAATATGTTCCACGTCT................................................... 21 1 1 1.00 1 1
.....................................................CCGGTTGACCATAGAGCATGCGT..................................................................................... 23 2 1 1.00 1 1
.........................................................................................TATGTAATAGGGTCCACGTAT................................................... 21 2 1 1.00 1 1
.........................................................................................TATGTAATAGGGTCCACGTCTAT................................................. 23 3 2 0.50 1 1
.........................................................................................TATGTAATAAGGTCCACGTAT................................................... 21 2 3 0.33 1 1
.........................................................................................TATGTACTAGGGTCCACGTCT................................................... 21 2 3 0.33 1 1

Anti-sense strand reads

ACTCCTTTCTCTGCGGCCAAGACTGTAGTCGGGAAAGGTGCCATGGACTTTTCTGCCAACTGGTATCTCGTACGCGACAGAGATCCAGCATACATTATACCAGGTGCAGAAGAGTTATAGTTTAAGTCAGCGTCTCCTGTAGGGTCTCCGTTTTGGTTGAA

************************************..((((..(((.((((((...(((((((..(((((((((.......)).)))))))..)))))))..)))))).))).)))).....************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:54 AM