ID:

eca-mir-379

 Coordinate:

chr24:42894643-42894709 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.2 -33.2 -33.2

Sense Strand Reads

TTCAGGGACAAGCCCTGGTTCTGGGGTCAGCACCACTCCATGGTTCCTGAAGAGATGGTAGACTATGGAACGTAGGCTTTATGATTTTTGACCTATGTAACATGGTCCACTAACTCTCAGTATCCAATCCATCCTCGGAGGGCACCCCGGAGGTGTTGCCAACGTGA

****************************************(((...((((.(((.((((.(((((((..(((((((...............)))))))..))))))).)))).)))))))...)))...************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.......................................................TGGTAGACTATGGAACGTAGG........................................................................................... 21 0 1 487.00 487 487
.......................................................TGGTAGACTATGGAACGTAGGT.......................................................................................... 22 1 1 232.00 232 232
.......................................................TGGTAGACTATGGAACGTAGGA.......................................................................................... 22 1 1 207.00 207 207
.............................................................................................TATGTAACATGGTCCACTAAC..................................................... 21 0 1 90.00 90 90
.......................................................TGGTAGACTATGGAACGTAG............................................................................................ 20 0 1 58.00 58 58
.............................................................................................TATGTAACATGGTCCACTAACT.................................................... 22 0 1 37.00 37 37
.......................................................TGGTAGACTATGGAACGTAGGAA......................................................................................... 23 2 1 32.00 32 32
.......................................................TGGTAGACTATGGAACGTAGGTA......................................................................................... 23 2 1 27.00 27 27
.......................................................TGGTAGACTATGGAACGTAGGC.......................................................................................... 22 0 1 25.00 25 25
.......................................................TGGTAGACTATGGAACGTAGGTT......................................................................................... 23 1 1 15.00 15 15
.............................................................................................TATGTAACACGGTCCACTAACT.................................................... 22 1 2 14.00 28 28
.......................................................TGGTAGACTATGGAACGTAGGTAT........................................................................................ 24 2 1 13.00 13 13
......................................................ATGGTAGACTATGGAACGTAGG........................................................................................... 22 0 1 11.00 11 11
.......................................................TGGTGGACTATGGAACGTAGG........................................................................................... 21 1 1 10.00 10 10
.......................................................TGGTAGACTATGGAACGTAGT........................................................................................... 21 1 1 10.00 10 10
.......................................................TGGTAGACTATGGAACGTAGA........................................................................................... 21 1 1 9.00 9 9
.............................................................................................TATGTAACATGGTCCACTAACA.................................................... 22 1 1 9.00 9 9
.......................................................TGGTAGACTATGGAACGTA............................................................................................. 19 0 1 9.00 9 9
.......................................................TGGTAGACTATGGAACGTAGGG.......................................................................................... 22 1 1 7.00 7 7
.......................................................TGGTAGACTATGGAACGTAGGAG......................................................................................... 23 2 1 6.00 6 6
.......................................................TGGTAGACTATGGAACGTAGGAT......................................................................................... 23 1 1 6.00 6 6
.......................................................TGGTAGACTATGGAACGTAGGTAA........................................................................................ 24 3 1 5.00 5 5
......................................................ATGGTAGACTATGGAACGTAGGA.......................................................................................... 23 1 1 5.00 5 5
.......................................................TGGTAGACTATGGAACGTAGGAAT........................................................................................ 24 2 1 5.00 5 5
.......................................................TGGTAGACTATGGAACGTAT............................................................................................ 20 1 1 5.00 5 5
.......................................................TGGTAGACTATGGAACGTAA............................................................................................ 20 1 1 4.00 4 4
.......................................................TGGTAGACTATGGAACGTAAG........................................................................................... 21 1 1 4.00 4 4
.......................................................TGGTGGACTATGGAACGTAGGA.......................................................................................... 22 2 1 4.00 4 4
.......................................................TGGTAGACTATGGAACGTAGGCAT........................................................................................ 24 1 1 4.00 4 4
.......................................................TGGTAGACTATGGAACGTAGGAGT........................................................................................ 24 2 1 3.00 3 3
.......................................................TGGTAGACTATGGAACGTAGGTGT........................................................................................ 24 2 1 3.00 3 3
.......................................................TGGTAGACTATGGAACG............................................................................................... 17 0 1 3.00 3 3
.......................................................TGGTAGACTATGGAACGTAGGAAA........................................................................................ 24 3 1 3.00 3 3
.......................................................TGGTAGACTATGGAACGTAGGAGA........................................................................................ 24 3 2 2.00 4 4
......................................................ATGGTAGACTATGGAACGTAG............................................................................................ 21 0 1 2.00 2 2
.......................................................TGGTAGACTATGGAACGTAGGGA......................................................................................... 23 2 1 2.00 2 2
.......................................................TGGTAGACTATGGAACGTATGC.......................................................................................... 22 1 1 2.00 2 2
.......................................................TGGTAGACTATGGAACGT.............................................................................................. 18 0 1 2.00 2 2
............................................................................CTTTATGATTTTTGACC.......................................................................... 17 0 2 2.00 4 4
.......................................................TGGTAGACTATGGAACGTAGGCT......................................................................................... 23 0 1 2.00 2 2
.......................................................TGGTAGGCTATGGAACGTAGGA.......................................................................................... 22 2 1 2.00 2 2
.............................................................................................TATGTAACATGGGCCACTAAC..................................................... 21 1 1 1.00 1 1
.......................................................TGGTAGACTATGGAACGTAGGAAG........................................................................................ 24 3 1 1.00 1 1
.............................................................................................TATGTAACATGGTCCACTA....................................................... 19 0 1 1.00 1 1
.......................................................TGGTAGACTATGTAACGTAGGC.......................................................................................... 22 1 1 1.00 1 1
.......................................................TGGTAGTCTATGGAACGTAGG........................................................................................... 21 1 1 1.00 1 1
.......................................................TGGTAGACTATGGAGCGTAGG........................................................................................... 21 1 1 1.00 1 1
.......................................................TGGGAGACTATGGAACGTAGG........................................................................................... 21 1 1 1.00 1 1
.............................................................................................TATGTAACATGGTCAACTAAC..................................................... 21 1 1 1.00 1 1
.......................................................TGGTAGACTATGGAACGTAAGCT......................................................................................... 23 1 1 1.00 1 1
.......................................................TGGCAGACTATGGAACGTAGG........................................................................................... 21 1 1 1.00 1 1
.......................................................TGGTAGACTATGGAACGTAGGTTTT....................................................................................... 25 1 1 1.00 1 1
.......................................................TGGTAGACTATCGAACGTAGG........................................................................................... 21 1 1 1.00 1 1
.......................................................TGGTAGACTATTGAACGTAGGA.......................................................................................... 22 2 1 1.00 1 1
....................................................ATCTGGTAGACTATGGAACGTAGG........................................................................................... 24 2 1 1.00 1 1
.......................................................TGGTAGACTATGGAACTTAGGA.......................................................................................... 22 2 1 1.00 1 1
....................................................ATCTGGTAGACTATGGAACGTAGGAT......................................................................................... 26 3 1 1.00 1 1
.............................................................................................TATGTAACATGGTCCAGTAAC..................................................... 21 1 1 1.00 1 1
.......................................................TGGTAGACTATGGAGCATAGG........................................................................................... 21 2 1 1.00 1 1
.......................................................TGGTAGACTCTGGAACGTAGG........................................................................................... 21 1 1 1.00 1 1
.......................................................TGGTAGACTATGGAGCGTAGGT.......................................................................................... 22 2 1 1.00 1 1
.......................................................TGGTAGACTATGGAACGTAAT........................................................................................... 21 2 4 1.00 4 4
........................................................GGTAGACTATGGAACGTAGG........................................................................................... 20 0 1 1.00 1 1
.......................................................TGGTAGACTATGGAACATAGG........................................................................................... 21 1 1 1.00 1 1
......................................................ATGGTAGACTATGGAACGTAGA........................................................................................... 22 1 1 1.00 1 1
.............................................................................................TATGTAACATGGTCCACTAAT..................................................... 21 1 2 1.00 2 2
.......................................................TGGTAGACTATGGAACGTAGGTG......................................................................................... 23 2 1 1.00 1 1
.......................................................TGGTGGACTATGGAACGTAGGTT......................................................................................... 23 2 1 1.00 1 1
.......................................................TGGTAGACTATGGAACGTAAGGT......................................................................................... 23 2 1 1.00 1 1
.......................................................TGGTAGACTATGGAACGTAGGTAG........................................................................................ 24 3 1 1.00 1 1
.......................................................TGGTGGACTATGGAACGTAG............................................................................................ 20 1 1 1.00 1 1
.......................................................TGGTAGACTATGGAACGTAGGATG........................................................................................ 24 2 1 1.00 1 1
.......................................................GGGTAGACTATGGAACGTAGG........................................................................................... 21 1 1 1.00 1 1
.......................................................TGGTAGACTATGGAACGTAGGTTAT....................................................................................... 25 2 1 1.00 1 1
.............................................................................................TATGTAACATGATCCACTAAC..................................................... 21 1 1 1.00 1 1
.......................................................TGGTAGACTATGGAACGTAGGCA......................................................................................... 23 1 1 1.00 1 1
.......................................................TGGTAGACTATGGAACGTAGGATT........................................................................................ 24 1 1 1.00 1 1
.......................................................TGGTTGACTATGGAACGTAG............................................................................................ 20 1 1 1.00 1 1
.......................................................TGGTAGACTATGGAACGTAGGTAGT....................................................................................... 25 3 1 1.00 1 1
......................................................ATGGTGGACTATGGAACGTAG............................................................................................ 21 1 1 1.00 1 1
.......................................................TGGTAGACTATGGAACGTAGGCAG........................................................................................ 24 2 1 1.00 1 1
.......................................................TGGTAGACTATGGAACGTACGAA......................................................................................... 23 3 1 1.00 1 1
.......................................................TGGTGGACTATGGAACGTAGGC.......................................................................................... 22 1 1 1.00 1 1
.............................................................................................TATGTAACATGGTCCACTAACTA................................................... 23 1 1 1.00 1 1
.............................................................................................TATGTAACATGGTCCACTAG...................................................... 20 1 1 1.00 1 1
.......................................................TGGTAGACTGTGGAACGTAG............................................................................................ 20 1 1 1.00 1 1
.......................................................TGGTAGACTATGGAACGTAGGGAAT....................................................................................... 25 3 1 1.00 1 1
.......................................................TGGTAGACTATGGAGCGTAGGA.......................................................................................... 22 2 1 1.00 1 1
.......................................................TGGTAGACTATGGAACGTAGATT......................................................................................... 23 2 1 1.00 1 1
.......................................................TGGTAGACTATGCAACGTAGGA.......................................................................................... 22 2 1 1.00 1 1
.......................................................TGGTGGACTATGGAACGTAGGCAT........................................................................................ 24 2 1 1.00 1 1
.......................................................TGGTAGACTATGGAACGTACGT.......................................................................................... 22 2 1 1.00 1 1
.............................................................................................TATGTAACACGGTCCACTAATT.................................................... 22 2 4 0.50 2 2
.......................................................TGGTAGACTATGGAGCGTAG............................................................................................ 20 1 2 0.50 1 1
.......................................................TGGTAGACTATGGACCGTAGA........................................................................................... 21 2 2 0.50 1 1
.......................................................TCGTAGACTATGGAACG............................................................................................... 17 1 2 0.50 1 1
...........................................................AGACTATGGAACGTAGGA.......................................................................................... 18 1 2 0.50 1 1
.......................................................TTGTAGACTATGGAACGTAGT........................................................................................... 21 2 2 0.50 1 1
.............................................................................................TATGTAACACGGTCCACTACCT.................................................... 22 2 2 0.50 1 1
.......................................................TGGTAGACTGTGGAACGTAGGT.......................................................................................... 22 2 2 0.50 1 1
.......................................................TGGTAGACTATGGAACGTAAGAA......................................................................................... 23 3 3 0.33 1 1
.......................................................TGGTAGACTATGGAACGTAAA........................................................................................... 21 2 3 0.33 1 1
.......................................................TGGTGGACTATGGAACGTAGGGA......................................................................................... 23 3 3 0.33 1 1
.............................................................................................TATGTAACATGGTCCACTACT..................................................... 21 2 4 0.25 1 1
.......................................................TGGTAGACTGTGGAACGTAA............................................................................................ 20 2 5 0.20 1 1
.......................................................TGGTAGACTGTGGAACGTAAGA.......................................................................................... 22 3 6 0.17 1 1
.......................................................TGGTAGGCTGTGGAACGTAGGA.......................................................................................... 22 3 7 0.14 1 1
.............................................................................................TATGTACCAGGGTCCACTACCT.................................................... 22 3 7 0.14 1 1
.......................................................TGGTAGCCTGTGGAACGTAGGT.......................................................................................... 22 3 8 0.13 1 1
......................................................ATGGTAGACTATGGAACT............................................................................................... 18 1 9 0.11 1 1
......................................................CTGGTAGACTATGGAACGTAAA........................................................................................... 22 3 9 0.11 1 1
.......................................................TGGTAGGCTGTGGAACGTAG............................................................................................ 20 2 9 0.11 1 1
.......................................................TGGTGGACTATGGAACGTAGAA.......................................................................................... 22 3 10 0.10 1 1
.......................................................TGGTAGACTATGGAACGTAAAA.......................................................................................... 22 3 12 0.08 1 1

Anti-sense strand reads

AAGTCCCTGTTCGGGACCAAGACCCCAGTCGTGGTGAGGTACCAAGGACTTCTCTACCATCTGATACCTTGCATCCGAAATACTAAAAACTGGATACATTGTACCAGGTGATTGAGAGTCATAGGTTAGGTAGGAGCCTCCCGTGGGGCCTCCACAACGGTTGCACT

**************************************(((...((((.(((.((((.(((((((..(((((((...............)))))))..))))))).)))).)))))))...)))...**************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:53 AM