ID:

eca-mir-377

 Coordinate:

chr24:42932739-42932807 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.1 -37.4 -37.2

Sense Strand Reads

TGGTGAAGAGGCGTCCTGGTGGTGTTCTTGTCCCTGCCGACGTTTGATCCTTGAGCAGAGGTTGCCCTTGGTGAATTCGCTTTATTTATGTTGAATCACACAAAGGCAACTTTTGTTTGAGTATCAAATCCTGCCTGGGATGGCTTCCGGGACCCAGCCCAGGGTCTCC

*****************************************(((((((.(((((((((((((((((.(((((((.(((((.........)).))))))).))).))))))))))))))))).)))))))..************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
........................................................AGAGGTTGCCCTTGGTGAATTC........................................................................................... 22 0 1 51.00 51 51
..............................................................................................ATCACACAAAGGCAACTTTTGT..................................................... 22 0 1 46.00 46 46
..............................................................................................ATCACACAAAGGCAACTTTTG...................................................... 21 0 1 19.00 19 19
.....................................CGACGTTTGATCCTTGAGC................................................................................................................. 19 0 1 4.00 4 4
.............................................................................................AATCACACAAAGGCAACTTTTGT..................................................... 23 0 1 3.00 3 3
.............................................................................................AATCACACAAAGGCAACTTTT....................................................... 21 0 1 2.00 2 2
........................................................AGAGGTTGCCCTTGGTGAATT............................................................................................ 21 0 1 2.00 2 2
..............................................................................................CTCACACAAAGGCAACTTTTGT..................................................... 22 1 1 2.00 2 2
........................................................AGAGGTTGCCCTTGGTGAATTCT.......................................................................................... 23 1 1 2.00 2 2
.............................................................................................AATCACACAAAGGCAACTTTTG...................................................... 22 0 1 2.00 2 2
.....................................CGACGTTTGATACTTGAGC................................................................................................................. 19 1 1 1.00 1 1
..............................................................................................ATCACACAAGGGCAACTTTGGT..................................................... 22 2 1 1.00 1 1
........................................................AGAGGTTGCCCTTGGTGAATTG........................................................................................... 22 1 1 1.00 1 1
..............................................................................................ATCACACAAAGGCAACTTT........................................................ 19 0 1 1.00 1 1
........................................................AGAGGTTGCCCTTGGTGAATTA........................................................................................... 22 1 1 1.00 1 1
..............................................................................................ATCACACAAAGGCAACTTTT....................................................... 20 0 1 1.00 1 1
........................................................AGAGGTTGCCCTTGGTGAAT............................................................................................. 20 0 1 1.00 1 1
...........................................................................................TGAATCACACAAAGGCAACTTTT....................................................... 23 0 1 1.00 1 1
.......................GTTCTTGTCCCTGCCGACGCTTGATCCTTGAGC................................................................................................................. 33 1 1 1.00 1 1
........................................................AGAGGTTGCCCTTGGTGAAGTC........................................................................................... 22 1 1 1.00 1 1
..............................................................................................ATCACACAAGGGCAACTTTTGT..................................................... 22 1 1 1.00 1 1
..............................................................................................ATCACACAAAGGCAACTTTTGA..................................................... 22 1 1 1.00 1 1
..............................................................................................ATCACACAAAGGTAACTTTTGT..................................................... 22 1 1 1.00 1 1
...........................................................................................TGAATCACACAAAGGCAACTTT........................................................ 22 0 1 1.00 1 1
..............................................................................................ATCACACAAAGGGAACTTTTGT..................................................... 22 1 1 1.00 1 1
..............................................................................................ATCACACAAGGGCAACTTTTG...................................................... 21 1 1 1.00 1 1
........................................................AGAGGTTGCCCTTGGTGAATTCG.......................................................................................... 23 0 1 1.00 1 1
.............................................................................................AATCACACATAGGCAACTTATG...................................................... 22 2 1 1.00 1 1
..................................TGCCGACGTTTGATCCTTGAGC................................................................................................................. 22 0 1 1.00 1 1
........................................................AGAGGTTGCCCTTGGTGAAA............................................................................................. 20 1 2 0.50 1 1
....................................................................................................CAAAGGCAACTTTTG...................................................... 15 0 9 0.11 1 1

Anti-sense strand reads

ACCACTTCTCCGCAGGACCACCACAAGAACAGGGACGGCTGCAAACTAGGAACTCGTCTCCAACGGGAACCACTTAAGCGAAATAAATACAACTTAGTGTGTTTCCGTTGAAAACAAACTCATAGTTTAGGACGGACCCTACCGAAGGCCCTGGGTCGGGTCCCAGAGG

**************************************(((((((.(((((((((((((((((.(((((((.(((((.........)).))))))).))).))))))))))))))))).)))))))..***************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:55 AM