ID:

eca-mir-376c

 Coordinate:

chr24:42911104-42911169 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-26.4 -25.7 -25.7

Sense Strand Reads

GGATTGTGCTTGGTTCATGCTTTCCAGGACTAAACCCTTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGTTGTTTATGGTTAAACATAGAGGAAATTCCACGTTTTCAGTATCAAATGCTGCTTGGAGTCATTCCCGGACTGAAAGCACCGTCAGG

*********************************************((((.((((.(((((..(((((.(((((((((.............))))))))))))))..))))).)))).)))).......************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
............................................................................................AACATGGAGGAAATTCCACGT..................................................... 21 1 1 94.00 94 94
............................................................................................AACATAGAGGAAATTCCACGT..................................................... 21 0 1 28.00 28 28
............................................................................................AACATGGAGGAAATTCCACG...................................................... 20 1 1 11.00 11 11
............................................................................................AACATAGAGGAAATTCCACG...................................................... 20 0 1 5.00 5 5
............................................................................................CACATGGAGGAAATTCCACGT..................................................... 21 2 4 2.25 9 9
............................................................................................AACATAGAGGAAATTCCACGTT.................................................... 22 0 1 2.00 2 2
............................................................................................CACATAGAGGAAATTCCACGT..................................................... 21 1 1 2.00 2 2
............................................................TATTCCTTCTATGTTTATGTTG.................................................................................... 22 0 1 2.00 2 2
............................................................................................AACATGGAGGAAATTCCACGTT.................................................... 22 1 1 2.00 2 2
............................................................................................AACATGGAGGAGATTCCACGT..................................................... 21 2 2 1.50 3 3
............................................................................................AACATAGAGGAAATGCCACGT..................................................... 21 1 1 1.00 1 1
............................................................................................AACATAGAGGAAATTCCACGTAT................................................... 23 1 1 1.00 1 1
............................................................................................CACATAGAGGAAATTCCACGTT.................................................... 22 1 1 1.00 1 1
............................................................................................AACATAGAGGAAATTCCACGCT.................................................... 22 1 1 1.00 1 1
.............................................................................................ACATAGAGGAAATTCCACGTAAT.................................................. 23 2 2 1.00 2 2
............................................................................................AACATAGAGGAAATTCCACGA..................................................... 21 1 1 1.00 1 1
............................................................................................AACATGGAGGAAATTCCACGC..................................................... 21 2 3 0.67 2 2
............................................................................................AACATAGAGGAAATTCCATG...................................................... 20 1 2 0.50 1 1
............................................................................................AACATAGAGGAAATTCCACT...................................................... 20 1 2 0.50 1 1
............................................................................................AACATGGAGGAAGTTCCACGT..................................................... 21 2 3 0.33 1 1
............................................................................................AACATGGAGGAAATTCCACTT..................................................... 21 2 8 0.13 1 1
............................................................................................AACATGGAGGAAATTCCACC...................................................... 20 2 20 0.05 1 1

Anti-sense strand reads

CCTAACACGAACCAAGTACGAAAGGTCCTGATTTGGGAAGAAACCATAAATTTTCCACCTATAAGGAAGATACAAATACAACAAATACCAATTTGTATCTCCTTTAAGGTGCAAAAGTCATAGTTTACGACGAACCTCAGTAAGGGCCTGACTTTCGTGGCAGTCC

**************************************((((.((((.(((((..(((((.(((((((((.............))))))))))))))..))))).)))).)))).......********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:54 AM