ID:

eca-mir-369

 Coordinate:

chr24:42935933-42936002 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.9 -33.7 -33.7

Sense Strand Reads

CGGGCCTGGGCCAAGCTGCCCACTCCTCGGCTCGGCGCCTCTCCTGGTACTTGAAGGGAGATCGACCGTGTCATATTCGCTTTATTGACTTCGAATAATACATGGTTGATCTTTTCTCGGTATCAAAGCTCACCTCGGAGGACCTCTTGGAGATAAAGCCCTGGTTGGGG

*******************************************.(((((((.((.((((((((((((((((..((((((............))))))..)))))))))))))))).)))))))))....***************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.............................................................................................AATAATACATGGTTGATCTTT........................................................ 21 0 1 224.00 224 224
.............................................................................................AATAATACATGGTTGATCTT......................................................... 20 0 1 109.00 109 109
..........................................................AGATCGACCGTGTCATATTCG........................................................................................... 21 0 1 79.00 79 79
.............................................................................................AATAATACATGGTTGATCTTTT....................................................... 22 0 1 12.00 12 12
.............................................................................................AATAATACATGGTTGATCT.......................................................... 19 0 1 10.00 10 10
.............................................................................................CATAATACATGGTTGATCTTT........................................................ 21 1 1 10.00 10 10
............................................................................................GAATAATACATGGTTGATCTTT........................................................ 22 0 1 8.00 8 8
............................................................................................GAATAATACATGGTTGATCTT......................................................... 21 0 1 6.00 6 6
..........................................................AGATCGACCGTGTCATATTCGC.......................................................................................... 22 0 1 6.00 6 6
..........................................................AGATCGACCGTGTCATATTCGT.......................................................................................... 22 1 1 6.00 6 6
..........................................................CGATCGACCGTGTCATATTCG........................................................................................... 21 1 1 6.00 6 6
..........................................................AGATCGACCGTGTCATATTCGCT......................................................................................... 23 0 1 5.00 5 5
.............................................................................................CATAATACATGGTTGATCTT......................................................... 20 1 1 5.00 5 5
.............................................................................................AATAATACATGGTTGATCTTA........................................................ 21 1 2 2.50 5 5
.............................................................................................AATAATACATGGTTGATCTGT........................................................ 21 1 1 2.00 2 2
..........................................................AGATCGACCGTGTCATATTC............................................................................................ 20 0 1 2.00 2 2
.............................................................................................AATAATACACGGTTGATCTAT........................................................ 21 2 1 2.00 2 2
..........................................................AGATCGACCGTGTCATATTAG........................................................................................... 21 1 1 2.00 2 2
.............................................................................................AATAATACATGGTTGATCTTTA....................................................... 22 1 1 2.00 2 2
.......................................................................................CCGTGGAATAATACATGGTTGATCTTT........................................................ 27 3 1 2.00 2 2
.............................................................................................AATAATACATGGTTGATCTAT........................................................ 21 1 1 2.00 2 2
.............................................................................................AATAGTACATGGTTGATCTTT........................................................ 21 1 1 2.00 2 2
..........................................................AGATCGACCGTGTCATAT.............................................................................................. 18 0 1 2.00 2 2
.............................................................................................AATAATACATGGTTGATCTTC........................................................ 21 1 2 2.00 4 4
.............................................................................................AATAATACATGGTTGATCTCT........................................................ 21 1 1 1.00 1 1
..........................................................AGATCGACCGTGTCATATT............................................................................................. 19 0 1 1.00 1 1
..........................................................AGATCGACCGTGTCATTTTCG........................................................................................... 21 1 1 1.00 1 1
.............................................................................................AATAATACATGGTTGATCTTTC....................................................... 22 1 1 1.00 1 1
.............................................................................................AATAATACATGGTTGATCTTCT....................................................... 22 1 1 1.00 1 1
.............................................................................................AATAGTACATGGTTGATCTT......................................................... 20 1 1 1.00 1 1
..........................................................AGATTGACCGTGTCATATTCG........................................................................................... 21 1 1 1.00 1 1
..........................................................AGATCGACCGTGTCGTATTCG........................................................................................... 21 1 1 1.00 1 1
.............................................................................................AATAATACATGGTTGATCTG......................................................... 20 1 2 1.00 2 2
.............................................................................................ATTAATACATGGTTGATCTT......................................................... 20 1 1 1.00 1 1
.............................................................................................AGTAATACATGGTTGATCTTT........................................................ 21 1 1 1.00 1 1
.............................................................................................AATGATACATGGTTGATCTT......................................................... 20 1 1 1.00 1 1
..........................................................AGATCGACCGTTTCATATTCG........................................................................................... 21 1 1 1.00 1 1
..........................................................AGATAGACCGTGTCATATTCG........................................................................................... 21 1 1 1.00 1 1
.............................................................................................AATAATACATGGTTGATC........................................................... 18 0 1 1.00 1 1
.............................................................................................GATAATACATGGTTGATCTTT........................................................ 21 1 1 1.00 1 1
............................................................................................GAATAGTACATGGTTGATCTT......................................................... 21 1 1 1.00 1 1
..............................................................................................ATAATACATGGTTGATCTTTT....................................................... 21 0 1 1.00 1 1
............................................................................................GAATAATACATGGTTGATCATT........................................................ 22 1 1 1.00 1 1
..........................................................AGATCGGCCGTGTCATATTCG........................................................................................... 21 1 1 1.00 1 1
.......................................................................................CCGTGGAATAATACATGGTTGATCTT......................................................... 26 3 1 1.00 1 1
.........................................................GAGATCGACCGTGTCATATTCG........................................................................................... 22 0 1 1.00 1 1
..............................................................................................ATAATACATGGTTGATCTTTCT...................................................... 22 2 3 0.67 2 2
.............................................................................................AATAATACATGGTTGAGCTTT........................................................ 21 1 2 0.50 1 1
.............................................................................................AATAATACATGGTTGATCTA......................................................... 20 1 2 0.50 1 1
.............................................................................................AGTAATACATGGTTGATCT.......................................................... 19 1 2 0.50 1 1
.............................................................................................AATAATACATGGTTGATTTTT........................................................ 21 1 2 0.50 1 1
.............................................................................................AATAATACAAGGTTGATCTT......................................................... 20 1 3 0.33 1 1
.............................................................................................AATAGTACATGGTTGATCT.......................................................... 19 1 4 0.25 1 1
.............................................................................................AATAATACAGGGTTGATCTAT........................................................ 21 2 6 0.17 1 1
.............................................................................................AATGGTACATGGTTGATCTTT........................................................ 21 2 6 0.17 1 1
.............................................................................................GATAATACATGGGTGATCTTT........................................................ 21 2 8 0.13 1 1

Anti-sense strand reads

GCCCGGACCCGGTTCGACGGGTGAGGAGCCGAGCCGCGGAGAGGACCATGAACTTCCCTCTAGCTGGCACAGTATAAGCGAAATAACTGAAGCTTATTATGTACCAACTAGAAAAGAGCCATAGTTTCGAGTGGAGCCTCCTGGAGAACCTCTATTTCGGGACCAACCCC

*****************************************.(((((((.((.((((((((((((((((..((((((............))))))..)))))))))))))))).)))))))))....******************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:55 AM