ID:

eca-mir-3613

 Coordinate:

chr17:21184996-21185116 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-25.8 -25.5 -25.3

Sense Strand Reads

GAGCGACGAGAGGCGGCGCCGTCCCCGGTGGAGCCGCCCGGGAAGAAAAGCCGGCGCGCAACACGATGGTTGGGTTTGGATTGTTGTACTTTTTTTTTTGTTCGTTGCATTTTTAGGAACAAAAAAAAAAGCCCAACCCTTCACACCACTTCATCCGCATCTCTGAGGACCAGAAGCCCGGCCACAGCGGCTTGGTGGTACGGAGACGACTGTCTGCACCG

******************************************************************(((...(((.((((..((((..(((((((((((((((.............)))))))))))))))..))))..)))).)))...)))..****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.................................................................................TGTTGTACTTTTTTTTTTGTTC...................................................................................................................... 22 0 1 29.00 29 29
.................................................................................TGTTGTACTTTTTTTTTTGTT....................................................................................................................... 21 0 1 8.00 8 8
......................................................................................................................ACAAAAAAAAAAGCCCAACCCT................................................................................. 22 0 1 5.00 5 5
.........................................................................................................................................................TCCGCATCTCTGAGGACCAGAAGCCCGGCCT..................................... 31 1 1 2.00 2 2
............................................................................................................................................TCACACCACTTCATCCGCATCTCTGAGGACC.................................................. 31 0 1 2.00 2 2
......................................................................................................................ACAAAAAAAAAAGCCCAACCCTTT............................................................................... 24 1 1 2.00 2 2
.........................................................................................................................................................TCCGCATCTCTGAGGACCAGAAGCCCGGCC...................................... 30 0 1 1.00 1 1
.................................................................................TGTTGTACTTTTTTTTTTGTTCGT.................................................................................................................... 24 0 1 1.00 1 1
.................................................................................TGTTGTACTTTTTTTTTTGTTCT..................................................................................................................... 23 1 1 1.00 1 1
......................................................................................TACTTTTTTTTTTGTTCGTTGC................................................................................................................. 22 0 1 1.00 1 1
............................................................................................................................................TCACACCACTTCATCCGCATCTCTGA....................................................... 26 0 1 1.00 1 1
.................................................................................TGTTGTACTTTTTTTTTTGT........................................................................................................................ 20 0 1 1.00 1 1
.................................................................................TGTTGTACTATTTTTTTTGTTC...................................................................................................................... 22 1 1 1.00 1 1
............................................................................................................................................TCACACCACTTCATCCGCATCTCTGAGGACTT................................................. 32 2 1 1.00 1 1
.................................................................................TGTTGTACTTTGTTTTTTGTTC...................................................................................................................... 22 1 2 0.50 1 1
......................................................................................................................ACAAAAAAAAAAGCCCAACCCTA................................................................................ 23 1 2 0.50 1 1
......................................................................................................................ACAAAAAAAAAAGCCCAACCC.................................................................................. 21 0 2 0.50 1 1
.................................................................................TGTTGTACTTTTTTTTTTGTTA...................................................................................................................... 22 1 4 0.25 1 1
.................................................................................TGTTGTACTGTTTTTTTTGGTC...................................................................................................................... 22 2 4 0.25 1 1
.......................................................................................................GTTGCATTTTTAGGA....................................................................................................... 15 0 17 0.06 1 1
.................................................................................TGTTGTACTGTTTTTTTTGAT....................................................................................................................... 21 2 20 0.05 1 1

Anti-sense strand reads

CTCGCTGCTCTCCGCCGCGGCAGGGGCCACCTCGGCGGGCCCTTCTTTTCGGCCGCGCGTTGTGCTACCAACCCAAACCTAACAACATGAAAAAAAAAACAAGCAACGTAAAAATCCTTGTTTTTTTTTTCGGGTTGGGAAGTGTGGTGAAGTAGGCGTAGAGACTCCTGGTCTTCGGGCCGGTGTCGCCGAACCACCATGCCTCTGCTGACAGACGTGGC

******************************************************************(((...(((.((((..((((..(((((((((((((((.............)))))))))))))))..))))..)))).)))...)))..****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:45 AM