ID:

eca-mir-34a

 Coordinate:

chr2:41934533-41934595 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.6 -40.5 -40.2

Sense Strand Reads

GCCGGGTGTGCCTGCTGTGCCACGGACAGGGCCAGCTGTGCGTGTTTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTAATAGTGCGGGAAGCAATCAGCAAGTATACTGCCTTAGAACTGCTGCACGTTGTGGGGCCCGAGAGGAAGGGACAGGTGAGAGA

***********************************..(((((((.((((..(((((((((((.((((((((((....(((....)))....))))))))))))).))))))))..)))).))).))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................TGGCAGTGTCTTAGCTGGTTGT........................................................................................... 22 0 1 18.00 18 18
..................................................TGGCAGTGTCTTAGCTGGTTGTT.......................................................................................... 23 0 1 18.00 18 18
..................................................................................................................TAGAACTGCTGCACGTTGTGGGGCCCGAGA................... 30 0 1 6.00 6 6
..................................................TGGCAGTGTCTTAGCTGGTTG............................................................................................ 21 0 1 3.00 3 3
..................................................TGGCAGTGTCTTAGCTGGTTGTTT......................................................................................... 24 1 1 2.00 2 2
....................................................................................................................GAACTGCTGCACGTTGTGGGGCCCGAGA................... 28 0 1 2.00 2 2
..................................................TGGCAGTGTCTTAGCTGGTTGTA.......................................................................................... 23 1 1 2.00 2 2
..................................................TGGCAGTGTCTTAGCTGGTTGTAA......................................................................................... 24 2 1 2.00 2 2
..................................................TGGCAGTGTCTTAGCTGGTTGTAGT........................................................................................ 25 1 1 1.00 1 1
.............................................................................................................TGCCTTAGAACTGCTGCACGTTGTGGGGCT........................ 30 1 1 1.00 1 1
..................................................TGGCAGTGTCTTAGCTGGTTGTTTT........................................................................................ 25 1 1 1.00 1 1
..................................................TGGCAGTGTCTTAGCTGGTT............................................................................................. 20 0 1 1.00 1 1
..................................................TGGCAGTGTCTTAGCTGGTTGTAT......................................................................................... 24 2 1 1.00 1 1
..................................................TGGCAGTGTCTTAGCTGGTTGTTAT........................................................................................ 25 1 1 1.00 1 1
..................................................TGGCAGTGTCTTAGCTGGTTT............................................................................................ 21 1 1 1.00 1 1
................................................................................................TCAGCAAGTATACTGCCTTAGAACTGC........................................ 27 0 1 1.00 1 1
..................................................................................................................TAGAACTGCTGCACGTTGTGGGGCCCGAGTA.................. 31 2 1 1.00 1 1
.............................................................................................................TGCCTTAGAACTGCTGCACGTTGTGG............................ 26 0 1 1.00 1 1
..................................................TGGCAGTGTCTTAGCTGGTTGAAA......................................................................................... 24 3 3 0.33 1 1
..................................................TGGCAGTGTCTTAGCTGA............................................................................................... 18 1 13 0.08 1 1

Anti-sense strand reads

CGGCCCACACGGACGACACGGTGCCTGTCCCGGTCGACACGCACAAAGAAACCGTCACAGAATCGACCAACAACACTCATTATCACGCCCTTCGTTAGTCGTTCATATGACGGAATCTTGACGACGTGCAACACCCCGGGCTCTCCTTCCCTGTCCACTCTCT

***********************************..(((((((.((((..(((((((((((.((((((((((....(((....)))....))))))))))))).))))))))..)))).))).))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...........................................................................................TCGTTAGTCGATGATGTGACGGA................................................. 23 3 4 0.25 1 1

Generated: 09/01/2015 at 11:48 AM