ID:

eca-mir-338

 Coordinate:

chr11:1976416-1976474 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.2 -40.1 -40.1

Sense Strand Reads

GTGATGGACGTGGCCCCGCCAGCCCCAGCCGCCGCACGGGCCGTCCTCCCCAACAATATCCTGGTGCTGAGTGATGACACACGCAACTCCAGCATCAGTGATTTTGTTGAAGAGGGCAGCTGCCAGCCTCCTGACCTGCCTGCCGCGCCCACCCAGCCC

************************************..(((.((((((..((((((.(((((((((((((((..((.....))..))).))))))))).))).))))))..)))))).)))..************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.......................................................................................TCCAGCATCAGTGATTTTGTT................................................... 21 0 1 31.00 31 31
.......................................................................................TCCAGCATCAGTGATTTTGTTG.................................................. 22 0 1 15.00 15 15
.......................................................................................TCCAGCATCAGTGATTTTGTTGA................................................. 23 0 1 3.00 3 3
.......................................................................................TCCAGCATCAGTGATTTTG..................................................... 19 0 1 2.00 2 2
.......................................................................................TCCAGCATCAGTGATTTTGT.................................................... 20 0 1 2.00 2 2
.......................................................................................TCCAGCATCAGTGATTTTGTA................................................... 21 1 1 2.00 2 2
...................................................AACAATATCCTGGTGCTGAGT....................................................................................... 21 0 1 2.00 2 2
.......................................................................................TCCAGCATCAGTAATTTTGTT................................................... 21 1 1 1.00 1 1
.......................................................................................TCCAGCGTCAGTGATTTTGTTG.................................................. 22 1 1 1.00 1 1
.................................................CCAACAATATCCTGGTGCTGA......................................................................................... 21 0 1 1.00 1 1
.......................................................................................TCCAGCATCAGTGATTTTGTTAA................................................. 23 1 1 1.00 1 1
......................................................................................CTCCAGCATCAGTGATTTTGTT................................................... 22 0 1 1.00 1 1
................................................CCCAACAATATCCTGGTGCTGT......................................................................................... 22 1 1 1.00 1 1
................................CGCACGGGCCGTCCTCCCC............................................................................................................ 19 0 1 1.00 1 1
.......................................................................................TCCAGCATCAGTGATTTTGTTT.................................................. 22 1 1 1.00 1 1
.......................................................................................TCCAGCATCAGTGATTTTGTAA.................................................. 22 2 6 0.17 1 1

Anti-sense strand reads

CACTACCTGCACCGGGGCGGTCGGGGTCGGCGGCGTGCCCGGCAGGAGGGGTTGTTATAGGACCACGACTCACTACTGTGTGCGTTGAGGTCGTAGTCACTAAAACAACTTCTCCCGTCGACGGTCGGAGGACTGGACGGACGGCGCGGGTGGGTCGGG

************************************..(((.((((((..((((((.(((((((((((((((..((.....))..))).))))))))).))).))))))..)))))).)))..************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..............................................TGGGGTTGTTATAGGACCACGACT......................................................................................... 24 1 1 2.00 2 2
...............................................GGGGTTGTTATAGGACCACGACT......................................................................................... 23 0 1 1.00 1 1
......................................................................................AAGGTCGTAGTCACTAAAACAACT................................................. 24 1 1 1.00 1 1
.....................................................................................TGAGGTCGTAGTCACTAAAACAACT................................................. 25 0 1 1.00 1 1
.......................................................................................AGGTCGGAGTCACTAAAACAACT................................................. 23 1 1 1.00 1 1
........................................................................................GGTCGTAGTCACTAAAACAACT................................................. 22 0 1 1.00 1 1
.........................................................................................GTCGTAGTCACTAAAACAACT................................................. 21 0 1 1.00 1 1
.....................................................................................TGATGTCGTAGTCACTAAAACAACT................................................. 25 1 1 1.00 1 1

Generated: 09/01/2015 at 11:34 AM