ID:

eca-mir-337

 Coordinate:

chr24:42738909-42739000 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.8 -45.8 -45.8

Sense Strand Reads

CACCTGCCGTCCGGGGTGCACACAATGCTTCCGGGAGGAGGGTCGCGGCCGTAGTCAGTAGGTGGGGGGTGAGAACGGCTTCATACAGGAGCTGATGCGCAGTTACCCAGCTCCTATGAGATGCCTTTCCTCACCCCTTCACCTCGCGCAGCCCCCGGGCCCTCCTCGGCACCCCCGGCTGCACAGGGGTGC

*********************************************************..((((((((((((((((.(((.((.((.((((((((.............)))))))).)).)).))).)).)))))))).))))))...********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..............................................................................................................CTCCTGTGAGATGCCTTTCCTC............................................................ 22 1 1 4.00 4 4
........................................................................GAACGGCTTCATACAGGAGA.................................................................................................... 20 1 1 3.00 3 3
........................................................................GAACGGCTTCATACAGGAG..................................................................................................... 19 0 1 3.00 3 3
.........................................................................AACGGCTTCATACAGGAG..................................................................................................... 18 0 1 2.00 2 2
..............................................................................................................CTCCTGTGAGATGCCTTTCCT............................................................. 21 1 2 1.50 3 3
..............................................................................................................CTCCTGTGAGATGCCTTTCCTCA........................................................... 23 1 1 1.00 1 1
.........................................................................AACGGCTTCATACAGGAGC.................................................................................................... 19 0 1 1.00 1 1
..............................................................................................................CTCCTATGAGATGCCTTTCCTC............................................................ 22 0 1 1.00 1 1
........................................................................GAACGGCTTCAGACAGGAG..................................................................................................... 19 1 3 0.33 1 1
..............................................................................................................CTCCTGTGAGATGCCTTTCCTCT........................................................... 23 2 5 0.20 1 1

Anti-sense strand reads

GTGGACGGCAGGCCCCACGTGTGTTACGAAGGCCCTCCTCCCAGCGCCGGCATCAGTCATCCACCCCCCACTCTTGCCGAAGTATGTCCTCGACTACGCGTCAATGGGTCGAGGATACTCTACGGAAAGGAGTGGGGAAGTGGAGCGCGTCGGGGGCCCGGGAGGAGCCGTGGGGGCCGACGTGTCCCCACG

*********************************************..((((((((((((((((.(((.((.((.((((((((.............)))))))).)).)).))).)).)))))))).))))))...********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................................................................TCTCTTGCCGAAGTATGTCCTC..................................................................................................... 22 1 1 3.00 3 3
.............................................................................................................CGAGGATACTCTACGGAAAGG.............................................................. 21 0 1 1.00 1 1
...........................................................................................................TTCGAGGATACTCTACGGAAAGG.............................................................. 23 1 1 1.00 1 1

Generated: 09/01/2015 at 11:53 AM