ID:

eca-mir-335

 Coordinate:

chr4:85051753-85051827 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.4 -39.4 -38.9

Sense Strand Reads

atctcataggttaaagaaaatgagaagcgagattGGGAAAGATTTCTTTTGAGCGGGGGTCAAGAGCAATAACGAAAAATGTTTGTCATAAACCGTTTTTCATTATTGCTCCTGACCTCCTCTCATTTGCTATATCCAATTAAGTAAGTATATAATTttctttatattggtaatt

********************************************.....((((.((((((((.(((((((((.((((((((.((......)).)))))))).))))))))).)))))))).)))).......******************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...............................................................................................TTTTTCATTATTGCTCCTGACC.......................................................... 22 0 1 266.00 266 266
...........................................................TCAAGAGCAATAACGAAAAATGT............................................................................................. 23 0 1 91.00 91 91
...........................................................TCAAGAGCAATAACGAAAAATG.............................................................................................. 22 0 1 48.00 48 48
...........................................................TCAAGAGCAATAACGAAAAAT............................................................................................... 21 0 1 45.00 45 45
..............................................................................................GTTTTTCATTATTGCTCCTGACC.......................................................... 23 0 1 24.00 24 24
...............................................................................................TTTTTCATTATTGCTCCTGAC........................................................... 21 0 1 24.00 24 24
...............................................................................................TTTTTCATTATTGCTCCTGACT.......................................................... 22 1 1 23.00 23 23
...............................................................................................TTTTTCATTATTGCTCCTGACA.......................................................... 22 1 1 8.00 8 8
...............................................................................................TTTTTCATTATTGCTCCTGA............................................................ 20 0 1 5.00 5 5
...............................................................................................TTTTTCATTATTGCTCCTGACCT......................................................... 23 0 1 5.00 5 5
..............................................................................................GTTTTTCATTATTGCTCCTGACT.......................................................... 23 1 1 4.00 4 4
..............................................................................................GTTTTTCATTATTGCTCCTGAC........................................................... 22 0 1 4.00 4 4
..............................................................................................GTTTTTCATTATTGCTCCTGACCT......................................................... 24 0 1 4.00 4 4
...........................................................TCAAGAGCAATAACGAAAAATGA............................................................................................. 23 1 1 3.00 3 3
..............................................................................................GTTTTTCATTATTGCTCCTGACA.......................................................... 23 1 1 3.00 3 3
...........................................................TCAAGAGCAATAACGAAAAA................................................................................................ 20 0 1 3.00 3 3
...............................................................................................TTTTTCATTATTGCTCCTGACG.......................................................... 22 1 1 3.00 3 3
...........................................................TCAAGAGCAATAACGAAAAATGTT............................................................................................ 24 0 1 2.00 2 2
...............................................................................................TTTTTCATTATTGCTCCTGGCC.......................................................... 22 1 1 2.00 2 2
................................................................................................TTTTCATTATTGCTCCTGACC.......................................................... 21 0 1 2.00 2 2
...........................................................TCAAGAGCAATAACGAAAAGTGT............................................................................................. 23 1 1 2.00 2 2
...............................................................................................TTTTTCATTATGGCTCCTGACC.......................................................... 22 1 1 2.00 2 2
...........................................................TCAAGAGCAATAACGAAAAGTG.............................................................................................. 22 1 1 2.00 2 2
...............................................................................................TTTTTCATTATTGCTCCTGACCAAT....................................................... 25 3 2 1.50 3 3
...............................................................................................TATTTCATTATTGCTCCTGACC.......................................................... 22 1 1 1.00 1 1
..............................................................................................GTTTTTCATTATTGCTCCTGACCA......................................................... 24 1 1 1.00 1 1
..............................................................................................GTTTTTCATTATTGCTCCTGACCATT....................................................... 26 3 1 1.00 1 1
..............................................................................................GTTTTTCATTAGTGCTCCTGACC.......................................................... 23 1 1 1.00 1 1
...............................................................................................TTTTTCATTATTGCTCCTGACCAAAT...................................................... 26 3 1 1.00 1 1
...........................................................TCAAGAGCAATAACGAAAAATGTA............................................................................................ 24 1 1 1.00 1 1
...............................................................................................TTTTTCATTATTGCTCATGACC.......................................................... 22 1 1 1.00 1 1
...........................................................TCAAGAGCAATAGCGAAAAATG.............................................................................................. 22 1 1 1.00 1 1
..............................................................................................GTTTTTCATTATTGCTCCTGACCAAA....................................................... 26 3 2 1.00 2 2
...........................................................TCAAGAACAATAACGAAAAATG.............................................................................................. 22 1 1 1.00 1 1
...............................................................................................TTTTTCATTATTGCTCCTGTCC.......................................................... 22 1 1 1.00 1 1
...............................................................................................TTTTTCGTTATTGCTCCTGACC.......................................................... 22 1 2 1.00 2 2
...............................................................................................TTTTTCATTATTGCTCCTGACAT......................................................... 23 1 1 1.00 1 1
...........................................................TCAAGAGCAATAACTAAAAATGT............................................................................................. 23 1 1 1.00 1 1
...............................................................................................TTTTTCATTATTGCTCCTGACAA......................................................... 23 2 1 1.00 1 1
...............................................................................................TTTTTCATTATTGCTCCTGACCC......................................................... 23 1 1 1.00 1 1
...............................................................................................TTTTTCATTATTGCTCCTGACCAAA....................................................... 25 3 2 1.00 2 2
..............................................................................................GTTTTTCATTATTGCTCCT.............................................................. 19 0 1 1.00 1 1
...............................................................................................TTTTTCATTATTGCTCCTGACCAA........................................................ 24 2 2 1.00 2 2
...............................................................................................TTTTTCATTATTCCTCCTGACC.......................................................... 22 1 1 1.00 1 1
...............................................................................................TTTTTCATTATTGCTCCTGACCAAGT...................................................... 26 3 1 1.00 1 1
...........................................................TCAAGAGCAATAACGAAAAATCT............................................................................................. 23 1 1 1.00 1 1
...........................................................TCAAGACCACTAACGAAAAATG.............................................................................................. 22 2 1 1.00 1 1
...............................................................................................TTTTTCATTATTGTTCCTGACC.......................................................... 22 1 1 1.00 1 1
...............................................................................................TTTTTCATTATTGCTCCTGACGTAAT...................................................... 26 3 1 1.00 1 1
...........................................................TCAAGAGCAATGACGAAAAATGT............................................................................................. 23 1 1 1.00 1 1
.................................................................................TTTGTCATAAACCGTTTTTCATTATTGCTCCTGACC.......................................................... 36 0 1 1.00 1 1
...............................................................................................TTTTTCATTATTGCTCCTGACCAATT...................................................... 26 3 1 1.00 1 1
...........................................................TCAAGAGCAATAACGAGAAATGT............................................................................................. 23 1 1 1.00 1 1
...............................................................................................TTTTTCATTATTGCTCCTGACCTATA...................................................... 26 3 1 1.00 1 1
...........................................................TCAAGAGCAATAACGAAAAATTT............................................................................................. 23 1 1 1.00 1 1
...............................................................................................TTTTTCATTATTGCTCCTGACCATAT...................................................... 26 3 1 1.00 1 1
...............................................................................................TTTTTCATTATTGCTCCTGCCC.......................................................... 22 1 1 1.00 1 1
...............................................................................................TTTTTCATTATTGCTCCTGACCATT....................................................... 25 3 3 0.67 2 2
...............................................................................................TTTTTCATTATTGCTCCTGACCAAG....................................................... 25 3 2 0.50 1 1
...............................................................................................TTTTTCATTATTACTCCTGACT.......................................................... 22 2 2 0.50 1 1
...............................................................................................TTTTTCATTATTGCTCCTGAT........................................................... 21 1 2 0.50 1 1
...............................................................................................TTTTTCATTATTGCTCCTGACTTTTT...................................................... 26 3 3 0.33 1 1
...............................................................................................TTTTTCATTATTGCTCGTGACA.......................................................... 22 2 3 0.33 1 1
...............................................................................................TTTTTCATTATTGCTCCTGACCATTT...................................................... 26 3 3 0.33 1 1
...............................................................................................TTTTTCATTATTGCTCCTGACCAGT....................................................... 25 3 3 0.33 1 1
...............................................................................................TTTTTCATTATTGCTCCTGG............................................................ 20 1 3 0.33 1 1
...............................................................................................TTTTTCATTATTGCTCCTGAAT.......................................................... 22 2 4 0.25 1 1
...............................................................................................TTTTTCATTATTGCTCCTGATT.......................................................... 22 2 4 0.25 1 1
...............................................................................................TTTTTCTTTGTTGCTCCTGACC.......................................................... 22 2 6 0.17 1 1
...............................................................................................TTTTTCATTATGGCTCCTGACA.......................................................... 22 2 6 0.17 1 1
...............................................................................................TTTTTCATTATTGCTCCTGGCT.......................................................... 22 2 6 0.17 1 1
...............................................................................................TTTTTCATTATTGCTCCTGATA.......................................................... 22 2 7 0.14 1 1
...............................................................................................TTTTTCATTATTGCTCCTGAAA.......................................................... 22 2 8 0.13 1 1
...............................................................................................TTTTTCATTATTGCTCC............................................................... 17 0 12 0.08 1 1

Anti-sense strand reads

TtGtGTtTggttTTTgTTTTtgTgTTgGgTgTttCCCTTTCTAAAGAAAACTCGCCCCCAGTTCTCGTTATTGCTTTTTACAAACAGTATTTGGCAAAAAGTAATAACGAGGACTGGAGGAGAGTAAACGATATAGGTTAATTCATTCATATATTAAttGtttTtTttggtTTtt

*******************************************.....((((.((((((((.(((((((((.((((((((.((......)).)))))))).))))))))).)))))))).)))).......******************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.........................................................CCAGTCCTCGTTATTGCTTTTT................................................................................................ 22 1 2 1.00 2 2

Generated: 09/01/2015 at 12:01 PM