ID:

eca-mir-331

 Coordinate:

chr28:20407820-20407911 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.7 -42.3 -42.1

Sense Strand Reads

CCATATGAGTGAAAGCCCAGAAGTCTACCTGAGCTGAAAGCACTCCCAAGGAATTTGGTTTTGTTTGGGTTTGTTCTAGGTATGGTCCCAGGGATCCCAGATCAAACCAGGCCCCTGGGCCTATCCTAGAACCAACCTAAACTCGCGCATCATTCCTGGAACGTCAAGAATGTGAAGACTGAAGATAACCTG

***********************************************************...(((((((((.((((((((.((((.(((((((...((...........)).))))))).)))))))))))).)))))))))....********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..........................................................................TCTAGGTATGGTCCCAGGGATC................................................................................................ 22 0 1 11.00 11 11
..............................................................................................................GCCCCTGGGCCTATCCTAGAA............................................................. 21 0 1 9.00 9 9
..............................................................................................................GCCCCTGGGCCTATCCTAGAAA............................................................ 22 1 1 9.00 9 9
..............................................................................................................GCCCCTGGGCCTATCCTAGAAT............................................................ 22 1 1 8.00 8 8
...............................................................................................................CCCCTGGGCCTATCCTAGAACT........................................................... 22 1 1 7.00 7 7
..........................................................................TCTAGGTATGGTCCCAGGGAT................................................................................................. 21 0 1 6.00 6 6
..........................................................................TCTAGGTATGGTCCCAGGGATCC............................................................................................... 23 0 1 6.00 6 6
..............................................................................................................GCCCCTGGGCCTATCCTAGAC............................................................. 21 1 1 6.00 6 6
..............................................................................................................GCCCCTGGGCCTATCCTAGA.............................................................. 20 0 1 6.00 6 6
..............................................................................................................GCCCCTGGGCCTATCCTAGACT............................................................ 22 2 1 5.00 5 5
..............................................................................................................GCCCCTGGGCCTATCCTAGAACT........................................................... 23 1 1 4.00 4 4
..............................................................................................................GCCCCTGGGCCTATCCTAGACC............................................................ 22 1 1 3.00 3 3
...............................................................................................................CCCCTGGGCCTATCCTAGAAC............................................................ 21 0 1 2.00 2 2
...........................................................................CTAGGTATGGTCCCAGGGAT................................................................................................. 20 0 1 2.00 2 2
..........................................................................TCTAGGTATGGTCCCAGGGATCT............................................................................................... 23 1 1 2.00 2 2
..............................................................................................................GCCCCTGGGCCTATCCTAGAAC............................................................ 22 0 1 2.00 2 2
...........................................................................CTAGGTATGGTCCCAGGGATC................................................................................................ 21 0 1 2.00 2 2
...........................................................................CTAGGTATGGTCCCAGGGATCCC.............................................................................................. 23 0 1 2.00 2 2
..........................................................................TCTAGGTATGGTCCCAGGGATCCT.............................................................................................. 24 1 1 2.00 2 2
..............................................................................................................GCCCCTGGGCCTATCCTAGAAAT........................................................... 23 2 1 2.00 2 2
...........................................................................CTAGGTATGGTCCCAGGGATCC............................................................................................... 22 0 1 2.00 2 2
.........................................................................TTCTAGGTATGGTCCCAGGGATCC............................................................................................... 24 0 1 1.00 1 1
..............................................................................................................GCCCCTGGGCCTATCCTAGACCTG.......................................................... 24 3 1 1.00 1 1
..........................................................................TCTAGGTATGGTCCCAGGGATCCCGAAT.......................................................................................... 28 2 1 1.00 1 1
..............................................................................................................GCCCCTGGGCCTATCCTAGAAG............................................................ 22 1 1 1.00 1 1
..............................................................................................................GCCCCTGGGCCTATCCTAGACCT........................................................... 23 2 1 1.00 1 1
...............................................................................................................CCCCTGGGCCTATCCTAGACCC........................................................... 22 1 1 1.00 1 1
...........................................................................CTAGGTATGGTCCCAGGGATCCAAAAT.......................................................................................... 27 2 1 1.00 1 1
...........................................................................CTAGGTATGGTCCCAGGGAG................................................................................................. 20 1 1 1.00 1 1
..............................................................................................................GCCCCTGGGCCTATCCTAG............................................................... 19 0 1 1.00 1 1
...............................................................................................................CCCCTGGGCCTATCCTAGAACC........................................................... 22 0 1 1.00 1 1
...............................................................................................................CCCCTGGGCCTATCCTAGAAAGA.......................................................... 23 2 1 1.00 1 1
...............................................................................................................CCCCTGGGCCTATCCTAGAATA........................................................... 22 2 1 1.00 1 1
........................................................GGTTTTGTTTGGGTTTGTT..................................................................................................................... 19 0 1 1.00 1 1
..........................................................................TCTAGGTATGGTCCCAGGGA.................................................................................................. 20 0 1 1.00 1 1
.........................................................................................................................................................TCCTGGAACGTCAAGAATGTGAAGACTGA.......... 29 0 1 1.00 1 1
...........................................................................CTAGGTATGGTCCCAGGGATCCAAAT........................................................................................... 26 3 1 1.00 1 1
...............................................................................................................CCCCTGGGCCTATCCTAGACC............................................................ 21 1 1 1.00 1 1
...........................................................................CTAGGTATGGTCCCAGGGATCCTT............................................................................................. 24 2 1 1.00 1 1
..........................................................................TCTAGGTATGGTCCCAGGGATT................................................................................................ 22 1 1 1.00 1 1
..........................................................................TCTAGGTATGGTCCCAGGGAA................................................................................................. 21 1 1 1.00 1 1
...................................................................................................................................CCAACCTAAACTCGCGCATCATTCCTGGA................................ 29 0 1 1.00 1 1
.........................................................................TTCTAGGTATGGTCCCAGGGATCAAA............................................................................................. 26 2 1 1.00 1 1
..........................................................................TCTAGGTATGGTCCCAGGGATCCC.............................................................................................. 24 0 1 1.00 1 1
..............................................................................................................GCCCCTGGGCCTATCCTAGAT............................................................. 21 1 1 1.00 1 1
..........................................................................TCTAGGTATGGTCCCAGGGATAA............................................................................................... 23 2 1 1.00 1 1
...........................................................................CTAGGTATGGTCCCAGGGATCCT.............................................................................................. 23 1 1 1.00 1 1
..............................................................................................................GCCCCTGGGCCTATCCTAGACA............................................................ 22 2 2 0.50 1 1
..............................................................................................................GCCCCTGGGCCTATCCTATAAAAA.......................................................... 24 3 2 0.50 1 1
.........................................................................TTCTAGGTATGGTCCCAGGGAAA................................................................................................ 23 2 2 0.50 1 1
..............................................................................................................GCCCCTGGGCCTATCCTAGGAA............................................................ 22 2 3 0.33 1 1
...............................................................................................................CCCCTGGGCCTATCCTAGT.............................................................. 19 1 3 0.33 1 1
...............................................................................................................CCCCTGGGCCTATCCTAGAATTT.......................................................... 23 3 5 0.20 1 1
................................................................................................CCAGATCAAACCAGG................................................................................. 15 0 8 0.13 1 1

Anti-sense strand reads

GGTATACTCACTTTCGGGTCTTCAGATGGACTCGACTTTCGTGAGGGTTCCTTAAACCAAAACAAACCCAAACAAGATCCATACCAGGGTCCCTAGGGTCTAGTTTGGTCCGGGGACCCGGATAGGATCTTGGTTGGATTTGAGCGCGTAGTAAGGACCTTGCAGTTCTTACACTTCTGACTTCTATTGGAC

**********************************************...(((((((((.((((((((.((((.(((((((...((...........)).))))))).)))))))))))).)))))))))....*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:58 AM