ID:

eca-mir-330

 Coordinate:

chr10:16156757-16156820 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-47.3 -47.0 -46.9

Sense Strand Reads

GATTGGCTCCCCTGCCACCTCGTGCTGTGTGATCCTTGGCGTTCACTGCCTCTCTGGGCCTGTGTCTTAGGCTCTTCAAAGATCAACCGAGCAAAAGCACACGGCCTGCAGAGAGGCAGCGCTGCGCTCCTTACGCGGCCCCCCTTACTCAGCAGACACCTCGG

***********************************..(((((...(((((((((((((((((((.(((..((((..............))))..))))))).))))..)))))))))))....))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................TCTCTGGGCCTGTGTCTTAGGCT........................................................................................... 23 0 1 45.00 45 45
..................................................TCTCTGGGCCTGTGTCTTAGGA............................................................................................ 22 1 1 12.00 12 12
..................................................TCTCTGGGCCTGTGTCTTAGGCTC.......................................................................................... 24 0 1 5.00 5 5
..................................................TCTCTGGGCCTGTGTCTTAGGCA........................................................................................... 23 1 1 4.00 4 4
..................................................TCTCTGGGCCTGTGTCTTAGGC............................................................................................ 22 0 1 4.00 4 4
............................................................................................CAAAGCACACGGCCTGCAGAGAGG................................................ 24 1 1 3.00 3 3
..................................................TCTCTGGGCCTGTGTCTTAGG............................................................................................. 21 0 1 2.00 2 2
..................................................TCTCTGGGCCTGTGTCTTAGGCTT.......................................................................................... 24 1 1 2.00 2 2
..................................................TCTCTGGGCCTGTGTCTTAGGGT........................................................................................... 23 1 1 2.00 2 2
............................................................................................CAAAGCACACGGCCTGCAGAGT.................................................. 22 2 2 2.00 4 4
..................................................TCTCTGGGCATGTGTCTTAAGC............................................................................................ 22 2 1 1.00 1 1
..................................................TCTCTGGGCCTGTGTCTTAGGCTACA........................................................................................ 26 3 1 1.00 1 1
..................................................TCTCTGGGCATGTGTCTTAGGCT........................................................................................... 23 1 1 1.00 1 1
............................................................................................CAAAGCACACGGCCTGCAGAGAGT................................................ 24 2 2 1.00 2 2
...........................................................................................GCAAAGCACACGGCCTGCAGAGAGGT............................................... 26 3 1 1.00 1 1
............................................................................................CAAAGCACACGGCCTGCAGAG................................................... 21 1 2 1.00 2 2
..................................................TCTCTGGGCCTGTGTCTTAGGCTA.......................................................................................... 24 1 1 1.00 1 1
..................................................TCTCTGGGGCTGTGTCTTAGGCT........................................................................................... 23 1 1 1.00 1 1
............................................................................................CAAAGCACACGGCCTGCAGAGA.................................................. 22 1 2 0.50 1 1
..................................................TCTCTGGGCCTGTGTCTTAGA............................................................................................. 21 1 2 0.50 1 1
............................................................................................CAAAGCACACGGCCTGCAGA.................................................... 20 1 2 0.50 1 1
............................................................................................CAAAGCACACGGCCTGCAGAGAGC................................................ 24 2 2 0.50 1 1
...........................................................................................GCAAAGCACACGGCCTGCAGAGT.................................................. 23 3 8 0.25 2 2
............................................................................................CAAAGCACACGGCCTGCAGAA................................................... 21 2 5 0.20 1 1
............................................................................................CAAAGCACACGGCCTGCAGAGAAC................................................ 24 3 5 0.20 1 1
..................................................TCTCTGAGCGTGTGTCTTAAGCT........................................................................................... 23 3 10 0.10 1 1
............................................................................................CAAAGCACACTGCCTGCAGAGAGT................................................ 24 3 10 0.10 1 1
............................................................................................CAAAGCACACGGCCTGCAGAGCA................................................. 23 3 12 0.08 1 1

Anti-sense strand reads

CTAACCGAGGGGACGGTGGAGCACGACACACTAGGAACCGCAAGTGACGGAGAGACCCGGACACAGAATCCGAGAAGTTTCTAGTTGGCTCGTTTTCGTGTGCCGGACGTCTCTCCGTCGCGACGCGAGGAATGCGCCGGGGGGAATGAGTCGTCTGTGGAGCC

***********************************..(((((...(((((((((((((((((((.(((..((((..............))))..))))))).))))..)))))))))))....))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:33 AM