ID:

eca-mir-329a

 Coordinate:

chr24:42899352-42899449 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.8 -36.4

Sense Strand Reads

GGACTTCCAGGACTGAATGTCAAGTCTGGGAAGAATCAGTGTTCTTGTCAGTGTTAATCAGTGGTACCTGAAGAGAGGTTTTCTGGGTTTCTGTTTCTTTAATGAAGATGAAACACACCTAGTTAACCTCTTTTCCAGTATCAGATCCCATCTTGGAGGCCTTCTGGTCCAGACCTCGGCTTCGGGGAGGGGCGTTAC

***********************************************************..((((((..(((((((((((..((((((...((((((.((......)).)))))).))))))..)))))))))))..))))))...**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...............................................................................................................AACACACCTAGTTAACCTCTCT................................................................. 22 1 1 14.00 14 14
...............................................................................................................AACACACCTAGTTAACCTCTCC................................................................. 22 2 1 11.00 11 11
................................................................................................................ACACACCTAGTTAACCTCTCCT................................................................ 22 2 1 5.00 5 5
..........................................................................GAGGTTTTCTGGGTTTCTGTTT...................................................................................................... 22 0 1 3.00 3 3
.........................................................................AGAGGTTTTCTGGGTTTCTGTT....................................................................................................... 22 0 1 2.00 2 2
..........................................................................GAGGTTTTCTGGGTTTCTGTTTC..................................................................................................... 23 0 1 2.00 2 2
...............................................................................................................AACACACCTAGTTAACCTCTC.................................................................. 21 1 1 2.00 2 2
................................................................................................................ACACACCTAGTTAACCTCTATT................................................................ 22 1 1 2.00 2 2
...............................................................................................................AACACACCTAGTTAACCTCT................................................................... 20 0 1 2.00 2 2
...............................................................................TTTCTGGGTTTCTGTTTCTTT.................................................................................................. 21 0 1 2.00 2 2
...............................................................................................................AACACACCTAGTTAACCTC.................................................................... 19 0 1 1.00 1 1
................................................................................................................ACACACCTAGTTAACCTCTTT................................................................. 21 0 1 1.00 1 1
...............................................................................................................AACACACCTAGTTAACCTCTCTA................................................................ 23 2 1 1.00 1 1
...............................................................................................................AACACACCTAGTTAACCTCTCTTT............................................................... 24 2 1 1.00 1 1
...............................................................................................................AACACACCTAGTTAACCTCTTAA................................................................ 23 2 1 1.00 1 1
...............................................................................................................AACACACCTAGTTAACCTCTT.................................................................. 21 0 1 1.00 1 1
...............................................................................................................AACACACCTAGTTAACCTCTTT................................................................. 22 0 1 1.00 1 1
.........................................................................AGAGGTTTTCTGGGTTTCTGTTTCTTT.................................................................................................. 27 0 1 1.00 1 1
...............................................................................................................CACACACCTAGTTAACCTCTCT................................................................. 22 2 4 0.25 1 1
................................................................................................................ACACACCTAGTTAACCTCTCCA................................................................ 22 3 8 0.13 1 1

Anti-sense strand reads

CCTGAAGGTCCTGACTTACAGTTCAGACCCTTCTTAGTCACAAGAACAGTCACAATTAGTCACCATGGACTTCTCTCCAAAAGACCCAAAGACAAAGAAATTACTTCTACTTTGTGTGGATCAATTGGAGAAAAGGTCATAGTCTAGGGTAGAACCTCCGGAAGACCAGGTCTGGAGCCGAAGCCCCTCCCCGCAATG

****************************************************..((((((..(((((((((((..((((((...((((((.((......)).)))))).))))))..)))))))))))..))))))...*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:54 AM