ID:

eca-mir-324

 Coordinate:

chr11:50242526-50242608 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.2 -35.7 -35.7

Sense Strand Reads

GAAGCACCTCAGCAGAACAGCATGGCTCTCCCTATTCTGCAGAAGCTGAGCTGACTATGCCTCCCCGCATCCCCTAGGGCATTGGTGTAAAGCTGGAGACCCACTGCCCCAGGTGCTGCTGGGGGTTGTAGTCTAAACCGACCTGGAAGAAGGCACAGGGCTCTGGGGAGAGAGTGGTGGGGC

**************************************************..(((((((.(((((.(((...(((.(((((.(((.((..........))))).))))).)))...))).))))).)))))))...*********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.................................................................CGCATCCCCTAGGGCATTGGTGT............................................................................................... 23 0 1 26.00 26 26
.................................................................CGCATCCCCTAGGGCATTGGTG................................................................................................ 22 0 1 10.00 10 10
.................................................................CGCATCCCCTAGGGCATTG................................................................................................... 19 0 1 7.00 7 7
....................................................................................................CCACTGCCCCAGGTGCTGCTG.............................................................. 21 0 1 6.00 6 6
......................................................................................................ACTGCCCCAGGTGCTGCTGGT............................................................ 21 1 1 6.00 6 6
.................................................................CGCATCCCCTAGGGCATTGGTGA............................................................................................... 23 1 1 5.00 5 5
.................................................................CGCATCCCCTAGGGCATTGGTGG............................................................................................... 23 1 1 5.00 5 5
....................................................................................................CCACTGCCCCAGGTGCTGCTGT............................................................. 22 1 1 3.00 3 3
....................................................................................................CCACTGCCCCAGGTGCTGCTGG............................................................. 22 0 1 3.00 3 3
.................................................................CGCATCCCCTAGGGCATTGGTA................................................................................................ 22 1 1 2.00 2 2
.....................................................................................TGTAAAGCTGGAGACCC................................................................................. 17 0 1 2.00 2 2
.............................................CTGAGCTGACTATGCCTCCC...................................................................................................................... 20 0 1 2.00 2 2
......................................................................................................ACTGCCCCAGGTGCTGCTGG............................................................. 20 0 1 2.00 2 2
....................................................................................................CCACTGCCCCAGGTGCTGCTGGA............................................................ 23 1 1 2.00 2 2
.................................................................CGCATCCCCTAGGGCATTGGTGTAAGT........................................................................................... 27 2 1 1.00 1 1
.................................................................CGCATCCCCTAGGGCATTGGTGTCT............................................................................................. 25 2 1 1.00 1 1
.................................................................CGCATCCCCTAGGGCATTGGTGTAT............................................................................................. 25 1 1 1.00 1 1
......................................................................................................ACTGCCCCAGGTGCTGCTGGATTTT........................................................ 25 3 1 1.00 1 1
.....................................................................................................CACTGCCCCAGGTGCTGCTGGAC........................................................... 23 2 1 1.00 1 1
.................................................................CGCATCCCCTAGGGCATTGGAT................................................................................................ 22 2 1 1.00 1 1
.................................................................CGCATCCCCTAGGGCATTGGTGTA.............................................................................................. 24 0 1 1.00 1 1
.................................................................CGCATCCCCTAGGGCATTGGTGTT.............................................................................................. 24 1 1 1.00 1 1
................................TATTCTGCAGAAGCTGAGCTGACTATGCCT......................................................................................................................... 30 0 1 1.00 1 1
......................................................................................................ACTGCCCCAGGTGCTGCTGGTT........................................................... 22 2 3 1.00 3 3
....................................................................................................CCACTGCCCCAGGTGCTGCTGGTT........................................................... 24 2 1 1.00 1 1
......................................................................................................ACTGCCCCAGGTGCTGCTGGAG........................................................... 22 1 1 1.00 1 1
.................................................................CGCATCCCCTAGGGCATTGGTGTAA............................................................................................. 25 0 1 1.00 1 1
.................................ATTCTGCAGAAGCTGAGCTGACTATGCCTCCC...................................................................................................................... 32 0 1 1.00 1 1
....................................................................................................CCACTGCCCCAGGTGCTGCTGGAT........................................................... 24 2 1 1.00 1 1
........................................................................................AAAGCTGGAGACCCACTGCCCCAGGTGCTGCTGG............................................................. 34 0 1 1.00 1 1
.................................................................................TTGGTGTAAAGCTGGAGACCCACTGCCCC......................................................................... 29 0 1 1.00 1 1
....................................................................................................CCACTGCCCCAGGTGCTGCTGTAGA.......................................................... 25 3 1 1.00 1 1
....................................................................................................CCACTGCCCCAGGTGCTGCTGGAA........................................................... 24 2 2 0.50 1 1
......................................................................................................ACTGCCCCAGGTGCTGCTGGA............................................................ 21 1 2 0.50 1 1
......................................................................................................ACTGCCCCAGGTGCTGCTGA............................................................. 20 1 2 0.50 1 1
......................................................................................................ACTGCCCCAGGTGCTGCTGGAAG.......................................................... 23 2 2 0.50 1 1
....................................................................................................CCACTGCCCCAGGTGCTGCTGGTAAT......................................................... 26 3 2 0.50 1 1
....................................................................................................CCACTGCCCCAGGTGCTGCA............................................................... 20 1 4 0.25 1 1
......................................................................................................ACTGCCCCAGGTGCTGCTGGTATT......................................................... 24 3 5 0.20 1 1
......................................................................................................ACTGCCCCAGGTGCTGCTGGTC........................................................... 22 2 5 0.20 1 1
......................................................................................................ACTGCCCCAGGTGCTGCTGGTA........................................................... 22 2 6 0.17 1 1
......................................................................................................ACTGCCCCAGGTGCTGCTGGTTAT......................................................... 24 3 6 0.17 1 1
....................................................................................................CCACTGCCCCAGGTGCTGCTGTTT........................................................... 24 3 6 0.17 1 1
......................................................................................................ACTGCCCCAGGTGCTGCTGGAC........................................................... 22 2 6 0.17 1 1
....................................................................................................CCACTGCCCCAGGTGCTGCTGGTTT.......................................................... 25 3 7 0.14 1 1
......................................................................................................CCTGCCCCAGGTGCTGCTG.............................................................. 19 1 14 0.07 1 1
......................................................................................................ACTGCCCCAGGTGCTGCTGGTAT.......................................................... 23 3 15 0.07 1 1
......................................................................................................ACTGCCCCAGGTGCTGCTGGTTA.......................................................... 23 3 18 0.06 1 1

Anti-sense strand reads

CTTCGTGGAGTCGTCTTGTCGTACCGAGAGGGATAAGACGTCTTCGACTCGACTGATACGGAGGGGCGTAGGGGATCCCGTAACCACATTTCGACCTCTGGGTGACGGGGTCCACGACGACCCCCAACATCAGATTTGGCTGGACCTTCTTCCGTGTCCCGAGACCCCTCTCTCACCACCCCG

***********************************************..(((((((.(((((.(((...(((.(((((.(((.((..........))))).))))).)))...))).))))).)))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:36 AM