ID:

eca-mir-3200

 Coordinate:

chr8:6217988-6218130 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.5 -34.4

Sense Strand Reads

GGgtTTTgtTGtttGTggtGttGTGGtGGGtgtTTTGGGgttGGtTGtGGgtggGtggGtGtGtGtgtGttttGGtGGgGGTgGtGGGttTgTGtGttGGgGgtgttGGTTTGTGTggttTtgGCTCCACACCTTGCGCTACTCAGGTCTGCTCGTGCCCTCCCATGGTATCAGCTCTCCTGCGATGTGGGGACCTCCATCCATTCTCCAGAGAGAACGAAGACGTCTTTCCCCTTTCCCTGG

************************************************************************..(((((((.(((((((.......((((((((((.((...((((((........)))))))).))))).)))))....))))..)))))))))).**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.................................................................................................................................CACCTTGCGCTACTCAGGTCTGC........................................................................................... 23 0 1 41.00 41 41
.................................................................................................................................CACCTTGCGCTACTCAGGTCTG............................................................................................ 22 0 1 33.00 33 33
.................................................................................................................................CACCTTGCGCTACTCAGGTCTGT........................................................................................... 23 1 1 17.00 17 17
.................................................................................................................................CACCTTGCGCTACTCAGGTCTGA........................................................................................... 23 1 1 6.00 6 6
.................................................................................................................................CACCTTGCGCTACTCAGGTCTGTA.......................................................................................... 24 2 1 3.00 3 3
.................................................................................................................................CACCTTGCGCTACTCAGGTCTGCT.......................................................................................... 24 0 1 3.00 3 3
.................................................................................................................................CACCTTGCGCTACTCAGGTCTGCAA......................................................................................... 25 2 1 2.00 2 2
.................................................................................................................................CACCTTGCGCTACTCAGGTCTGAT.......................................................................................... 24 1 1 2.00 2 2
.................................................................................................................................CACCTTGCGCTACTCAGGTCTGCA.......................................................................................... 24 1 1 2.00 2 2
.......................................................................................GAATCTGAGAAGGCGCACAAGGTTTGTG................................................................................................................................ 28 0 1 2.00 2 2
.................................................................................................................................CACCTTGCGCTACTTAGGTCTGCT.......................................................................................... 24 1 1 1.00 1 1
.................................................................................................................................CACCTTGCGCTACTCAGGTCTCC........................................................................................... 23 1 1 1.00 1 1
........................................................................................AATCTGAGAAGGCGCACAAGGTTTG.................................................................................................................................. 25 0 1 1.00 1 1
.................................................................................................................................CACCTTGCGCTACTCAGGTCTGG........................................................................................... 23 1 1 1.00 1 1
.................................................................................................................................CACCTTGCGCTAGTCAGGTCTGC........................................................................................... 23 1 1 1.00 1 1
.................................................................................................................................CACCTTGCGCTACTCAGGTCTGCAAT........................................................................................ 26 3 1 1.00 1 1
.................................................................................................................................CACCTTGCGCGACTCAGGTCTGC........................................................................................... 23 1 1 1.00 1 1
.................................................................................................................................CACCTTGCGCTACTCAGGTCTGAAT......................................................................................... 25 3 1 1.00 1 1
.................................................................................................................................CACCTTGCGATACTCAGGTATGC........................................................................................... 23 2 1 1.00 1 1
........................................................................................AATCTGAGAAGGCGCACAAGGTTT................................................................................................................................... 24 0 1 1.00 1 1
........................................................................................AATCTGAGAAGGCGCACAAGGT..................................................................................................................................... 22 0 1 1.00 1 1
.................................................................................................................................CACCTTGCGCTACTCAGGTCT............................................................................................. 21 0 1 1.00 1 1
.................................................................................................................................CACCTTGCGCTACTCAGGTCTTA........................................................................................... 23 2 1 1.00 1 1
.......................................................................................GAATCTGAGAAGGCGCACAAGGT..................................................................................................................................... 23 0 1 1.00 1 1
.................................................................................................................................CACCTTGCGCTACTCAGGTCTGCTAAA....................................................................................... 27 3 1 1.00 1 1
.................................................................................................................................CACCTTGCGCTACTCAGGTC.............................................................................................. 20 0 1 1.00 1 1
.................................................................................................................................CACCTTGCGCTACTCAGGTCTCT........................................................................................... 23 2 1 1.00 1 1
.................................................................................................................................CACCTTGCGCTACTCAGGTCTTC........................................................................................... 23 1 1 1.00 1 1
.................................................................................................................................CACCTTGCGCTAATCAGGTCTG............................................................................................ 22 1 1 1.00 1 1
.................................................................................................................................CACCTTGCGGTACTCAGGTCTG............................................................................................ 22 1 1 1.00 1 1
.................................................................................................................................CACCTTCCGGTACTCAGGTGTGC........................................................................................... 23 3 2 0.50 1 1

Anti-sense strand reads

CCgtAAAgtACtttCAggtCttCACCtCCCtgtAAACCCgttCCtACtCCgtggCtggCtCtCtCtgtCttttCCtCCgCCAgCtCCCttAgACtCttCCgCgtgttCCAAACACAggttAtgCGAGGTGTGGAACGCGATGAGTCCAGACGAGCACGGGAGGGTACCATAGTCGAGAGGACGCTACACCCCTGGAGGTAGGTAAGAGGTCTCTCTTGCTTCTGCAGAAAGGGGAAAGGGACC

****************************************************************************..(((((((.(((((((.......((((((((((.((...((((((........)))))))).))))).)))))....))))..)))))))))).************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:08 PM