ID:

eca-mir-31

 Coordinate:

chr23:40415223-40415289 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.9 -41.8 -41.6

Sense Strand Reads

GAAAAGTGAAACACTGAAGAGGCATGATGTTGCTCCTGTAACTTGGAACTGGAGAGGAGGCAAGATGCTGGCATAGCTGTTGAACTGAGAACCTGCTATGCCAACATATTGCCATCTCTCTTGTCTGACAGCAGCCATGGCCACCTGCATGCCAGTCCTCCATGTAT

***********************************((((....(((.((.(((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).))))))).))))))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.........................................................AGGCAAGATGCTGGCATAGCTG........................................................................................ 22 0 1 14.00 14 14
.........................................................AGGCAAGATGCTGGCATAGCTGT....................................................................................... 23 0 1 10.00 10 10
...............................................................................TTGAACTGAGAACCTGCTATGCCAACATATTGCCATC................................................... 37 0 1 5.00 5 5
.........................................................AGGCAAGATGCTGGCATAGCTGTTGAACTGAGAACC.......................................................................... 36 0 1 2.00 2 2
.........................................................AGGCAAGATGCTGGCATAGCTGTTGAACTGAGAACCT......................................................................... 37 0 1 2.00 2 2
.........................................................AGGCAAGATGCTGGCATAGCT......................................................................................... 21 0 1 2.00 2 2
...............................................................................TTGAACTGAGAACCTGCTATGACAACATATTGCCATC................................................... 37 1 1 1.00 1 1
.........................................................AGGCAAGATGCGGGCATAGCTATTGAACTGAGAACT.......................................................................... 36 3 1 1.00 1 1
.........................................................AGGCAAGATGCTGGCATAGCTGTTGAACTGAGAA............................................................................ 34 0 1 1.00 1 1
.........................................................CGGCAAGATGCTGGCATAGCTG........................................................................................ 22 1 1 1.00 1 1
....................................................................................................................TCTCTTGTCTGACAGCAGCCATGGCCACC...................... 29 0 1 1.00 1 1
................................................................................TGAACTGAGAACCTGCTATGCCAACATATTGTA...................................................... 33 2 1 1.00 1 1
...............................................................................TTGAACTGAGAACCTGCTATGCCAACATATTT........................................................ 32 1 1 1.00 1 1
.........................................................AGGCAAGATACTGGCATAGGTG........................................................................................ 22 2 4 0.25 1 1
.........................................................CGGCAAGATGCTGGGAGAGCTGT....................................................................................... 23 3 8 0.13 1 1

Anti-sense strand reads

CTTTTCACTTTGTGACTTCTCCGTACTACAACGAGGACATTGAACCTTGACCTCTCCTCCGTTCTACGACCGTATCGACAACTTGACTCTTGGACGATACGGTTGTATAACGGTAGAGAGAACAGACTGTCGTCGGTACCGGTGGACGTACGGTCAGGAGGTACATA

***********************************((((....(((.((.(((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).))))))).))))))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:52 AM