ID:

eca-mir-3065

 Coordinate:

chr11:1976383-1976503 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.8 -40.6 -40.5

Sense Strand Reads

CGCTTACACGTGGGGGCGAGCAGGCACCGGGGCTGGGTGGGCGCGGCAGGCAGGTCAGGAGGCTGGCAGCTGCCCTCTTCAACAAAATCACTGATGCTGGAGTTGCGTGTGTCATCACTCAGCACCAGGATATTGTTGGGGAGGACGGCCCGTGCGGCGGCTGGGGCTGGCGGGGCCACGTCCATCACCATTTCTTCCGGCATGTCCCCCTACGCTGCGCA

***************************************************************..(((((((.((((((((((((.(((.(((.(((((.(((...(((...))).)))))))).)))))).)))))))))))).))))...))).***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
......................................................................................................................TCAGCACCAGGATATTGTTGGGGT............................................................................... 24 1 1 2.00 2 2
......................................................................................................................TCAGCACCAGGATATTGTTGGGG................................................................................ 23 0 1 1.00 1 1
..............................................................................TCAACAAAATCACTGATGCTGGAA....................................................................................................................... 24 1 1 1.00 1 1
..............................................................................TCAACAAAATCACTGATGCTGGAGT...................................................................................................................... 25 0 1 1.00 1 1
..............................................................................TCAACAAAATCACTGAGGCTGGA........................................................................................................................ 23 1 1 1.00 1 1
..............................................................................TCAACAAAATCACTGATGCTGG......................................................................................................................... 22 0 1 1.00 1 1
..............................................................................TCAACAAAATCACTGATGCTG.......................................................................................................................... 21 0 1 1.00 1 1
..............................................................................TCAACAAAATCACTGATGCTGTAGT...................................................................................................................... 25 1 1 1.00 1 1

Anti-sense strand reads

GCGAATGTGCACCCCCGCTCGTCCGTGGCCCCGACCCACCCGCGCCGTCCGTCCAGTCCTCCGACCGTCGACGGGAGAAGTTGTTTTAGTGACTACGACCTCAACGCACACAGTAGTGAGTCGTGGTCCTATAACAACCCCTCCTGCCGGGCACGCCGCCGACCCCGACCGCCCCGGTGCAGGTAGTGGTAAAGAAGGCCGTACAGGGGGATGCGACGCGT

*****************************************************************..(((((((.((((((((((((.(((.(((.(((((.(((...(((...))).)))))))).)))))).)))))))))))).))))...))).*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
................................................................................TTGTTTTAGTGACTACGACCT........................................................................................................................ 21 0 1 31.00 31 31
...............................................................................GTTGTTTTAGTGACTACGACCT........................................................................................................................ 22 0 1 15.00 15 15
..............................................................................AGTTGTTTTAGTGACTACGACCT........................................................................................................................ 23 0 1 3.00 3 3
..................................................................................GTTTTAGTGACTACGACCT........................................................................................................................ 19 0 1 2.00 2 2
.................................................................................TGTTTTAGTGACTACGACCT........................................................................................................................ 20 0 1 2.00 2 2
................................................................................ATGTTTTAGTGACTACGACCT........................................................................................................................ 21 1 1 2.00 2 2
....................................................................................................................TGAGTCGTGGTCCTATAACAA.................................................................................... 21 0 1 2.00 2 2
................................................................................TTGTTTTAATGACTACGACCT........................................................................................................................ 21 1 1 1.00 1 1
...............................................................................GTTGTTTTAGTGACTGCGACCT........................................................................................................................ 22 1 1 1.00 1 1
......................................................................................................................AGTCGTGGTCCTATAACAACC.................................................................................. 21 0 1 1.00 1 1
..............................................................................AATTGTTTTAGTGACTACGACCT........................................................................................................................ 23 1 1 1.00 1 1
................................................................................TTGTTTTAGTGACTACGACCTC....................................................................................................................... 22 0 1 1.00 1 1
......................................................................................................................TGTCGTGGTCCTATAACAACCC................................................................................. 22 1 1 1.00 1 1
.........................................................................................................................................CCCCTCCTGCCGGGCACGC................................................................. 19 0 1 1.00 1 1
...............................................................................TTTGTTTTAGTGACTACGACCT........................................................................................................................ 22 1 1 1.00 1 1
...............................................................................AATGTTTTAGTGACTACGACCT........................................................................................................................ 22 2 6 0.17 1 1

Generated: 09/01/2015 at 11:34 AM