ID:

eca-mir-29c

 Coordinate:

chr5:30271715-30271802 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.7
mature

  1. eca-mir-29c  chr5:30271768-30271789 +
  2. eca-mir-29c-2  chr5:30369060-30369081 +
star

  1. eca-mir-29c  chr5:30271732-30271754 +
  2. eca-mir-29c-2  chr5:30369024-30369046 +

Sense Strand Reads

CTTGCCACCTGCACTGTCAAGTGCGGCCCCCCAGGAGCACCACTGGACCCATCTCTTACACAGGCTGACCGATTTCTCCTGGTGTTCAGAGTCTGTTTTTGTCTAGCACCATTTGAAATCGGTTATGATGTAGGGGGAAAAGCAGCAGCCTCGAAGCCTCGTGCCAAGTCTGGTCAGCAACCCCCTGT

****************************************************((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).))))))))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.......................................................................................................TAGCACCATTTGAAATCGGTTA............................................................... 22 0 2 102.00 204 204
.......................................................................................................TAGCACCATTTGAAATCGGTT................................................................ 21 0 2 54.50 109 109
.......................................................................................................TAGCACCATCTGAAATCGGTTAAG............................................................. 24 2 3 41.33 124 124
.......................................................................................................TAGCACCATTTGAAATCGGTTAA.............................................................. 23 1 2 38.00 76 76
.......................................................................................................TAGCACCATTTGAAATCGGT................................................................. 20 0 2 18.00 36 36
.......................................................................................................TAGCACCATTTGAAATCGGTTAT.............................................................. 23 0 2 17.50 35 35
.......................................................................................................TAGCACCATTTGAAATCGGTTAC.............................................................. 23 1 2 14.00 28 28
.................................................................TGACCGATTTCTCCTGGTGTTCT.................................................................................................... 23 1 2 12.50 25 25
.......................................................................................................TAGCACCATTTGAAATCGGTTACT............................................................. 24 2 2 10.00 20 20
.......................................................................................................TAGCACCATTTGAAATCGGTTAG.............................................................. 23 1 2 8.50 17 17
.......................................................................................................TAGCACCATTTGAAATCGGTTT............................................................... 22 1 2 6.00 12 12
.......................................................................................................TAGCACCATTTGAAATCGGTTAAG............................................................. 24 1 2 5.50 11 11
.......................................................................................................TAGCACCATTTGAAATCGGTTAGA............................................................. 24 2 3 4.67 14 14
.......................................................................................................TAGCACCATTTGAAATCGGTTAAA............................................................. 24 2 3 4.67 14 14
.......................................................................................................TAGCACCATTTGAAATCGGA................................................................. 20 1 2 4.00 8 8
.........................................................................................................GCACCATTTGAAATCGGTTACT............................................................. 22 2 2 3.50 7 7
.......................................................................................................TAGCACCATTTGAAATCGGTTG............................................................... 22 1 2 3.50 7 7
.......................................................................................................TAGCACCATTTGAAATCGGTAA............................................................... 22 1 2 3.50 7 7
...................................................................ACCGATTTCTCCTGGTGTTCAGA.................................................................................................. 23 0 2 3.50 7 7
.................................................................TGACCGATTTCTCCTGGTGTTCA.................................................................................................... 23 0 2 3.00 6 6
.................................................................TGACCGATTTCTCCTGGTGTTCAGAGTCTGT............................................................................................ 31 0 2 2.50 5 5
.................................................................TGACCGATTTCTCCTGGTGTTC..................................................................................................... 22 0 2 2.50 5 5
.......................................................................................................TAGCACCATTTGAAATCGGTTC............................................................... 22 1 2 2.00 4 4
.................................................................TGACCGATTTCTCCTGGTGTT...................................................................................................... 21 0 2 2.00 4 4
.......................................................................................................TAGCACCATTTGAAATCGGTTGA.............................................................. 23 2 2 2.00 4 4
.......................................................................................................TAGCACCATTTGAAATCGGAT................................................................ 21 1 2 2.00 4 4
.......................................................................................................TAGCACCATCTGAAATCGGTTAAGT............................................................ 25 3 3 1.67 5 5
...................................................................ACCGATTTCTCCTGGTGTTCAG................................................................................................... 22 0 2 1.50 3 3
...................................................................ACCGATTTCTCCTGGTGTTCAGT.................................................................................................. 23 1 2 1.50 3 3
.......................................................................................................TAGCACCATTTGAAATCGGTTAGT............................................................. 24 2 2 1.50 3 3
.......................................................................................................TAGCACCATTTGAAATCGGTTGT.............................................................. 23 1 2 1.50 3 3
.........................................................................................................GCACCATTTGAAATCGGTTATG............................................................. 22 0 2 1.50 3 3
..................................................................GACCGATTTCTCCTGGTGTTCAGA.................................................................................................. 24 0 2 1.50 3 3
.......................................................................................................TAGCACCATTTGAAATCGGTTATA............................................................. 24 1 3 1.33 4 4
.............................................................................................................CATTTGAAATCGGTTA............................................................... 16 0 3 1.33 4 4
...................................................................CCCGATTTCTCCTGGTGTTCAGT.................................................................................................. 23 2 2 1.00 2 2
.......................................................................................................TAGCACCATTTGAAATCGG.................................................................. 19 0 2 1.00 2 2
.......................................................................................................TAGCACCATCTGAAATCGGTTAGG............................................................. 24 2 3 1.00 3 3
.......................................................................................................TAGCACCATGTGAAATCGGGTA............................................................... 22 2 3 1.00 3 3
.......................................................................................................TAGCACCATTTGAAATCGGTTAAGT............................................................ 25 2 2 1.00 2 2
.......................................................................................................TAGCACAATTTGAAATCGGTT................................................................ 21 1 2 1.00 2 2
.......................................................................................................TAGCACCATTTGAAATCGGTA................................................................ 21 1 2 1.00 2 2
..................................................................GACCGATTTCTCCTGGTGTTCA.................................................................................................... 22 0 2 1.00 2 2
.......................................................................................................TAGCACCATTTGAAATCGGTTAAC............................................................. 24 2 2 1.00 2 2
......................................................................................................CTAGCACCATTTGAAATCGGTTAA.............................................................. 24 1 2 1.00 2 2
.......................................................................................................TAGCACCATTTGAAATCGGTAT............................................................... 22 2 4 0.75 3 3
.......................................................................................................TAGCACCATGTGAAATCGGTTAG.............................................................. 23 2 3 0.67 2 2
.......................................................................................................TAGCACCATTTGAAATCGGTTATAG............................................................ 25 2 3 0.67 2 2
..........................................................................................................CACCATTTGAAATCGGTTACT............................................................. 21 2 3 0.67 2 2
.......................................................................................................TAGCACCATTTGAAATCGGAAA............................................................... 22 2 3 0.67 2 2
.......................................................................................................TAGCACCATCTGAAATCGGGTAAG............................................................. 24 3 3 0.67 2 2
................................................................................................TTTTGTCTAGCACCATTTGAAATCGGTTACT............................................................. 31 2 2 0.50 1 1
.......................................................................................................GAGCACCATTTGAAATCGGTTA............................................................... 22 1 2 0.50 1 1
...........................................................................................................ACCATTTGAAATCGGTTAT.............................................................. 19 0 2 0.50 1 1
..................................................................GACCGATTTCTCCTGGTGTTC..................................................................................................... 21 0 2 0.50 1 1
...................................................................CCCGATTTCTCCTGGTGTTCAGA.................................................................................................. 23 1 2 0.50 1 1
.......................................................................................................TAGCACCATTTGAAATCGGTTCAG............................................................. 24 2 2 0.50 1 1
.......................................................................................................TAGCACCATTTGAAATCGGTAAT.............................................................. 23 1 2 0.50 1 1
.......................................................................................................TAGCACCATTTAAAATCGGTT................................................................ 21 1 2 0.50 1 1
.................................................................TGACCGATTTCTTCTGGTGTTC..................................................................................................... 22 1 2 0.50 1 1
.......................................................................................................TAGCACCATTCGAAATCGGTTA............................................................... 22 1 2 0.50 1 1
.......................................................................................................TAGCACCATTTGAAATAGGTTAC.............................................................. 23 2 2 0.50 1 1
...............................................................GGTGACCGATTTCTCCTGGTGT....................................................................................................... 22 1 2 0.50 1 1
.......................................................................................................TAGCACCATTTGAAATCGGTTAAT............................................................. 24 2 2 0.50 1 1
.......................................................................................................TAGCACCATTTGGAATCGGTTAA.............................................................. 23 2 2 0.50 1 1
.......................................................................................................TAGCAACATTTGAAATCGGTT................................................................ 21 1 2 0.50 1 1
.......................................................................................................TAGCACCATTTGAAATCGGGTA............................................................... 22 1 2 0.50 1 1
.......................................................................................................TAGCACCATTTGAAATGGGTTAG.............................................................. 23 2 2 0.50 1 1
...................................................................ACCGATTTCTCCTGGTGTTCAGAGTTT.............................................................................................. 27 1 2 0.50 1 1
.......................................................................................................TAGCACCATTTGAAATCGGTTATG............................................................. 24 0 2 0.50 1 1
...................................................................ACCGATTTCTCCTGGTGTTCAGAGTC............................................................................................... 26 0 2 0.50 1 1
.......................................................................................................TAGCACCATTTGAAATCGGTTAAGA............................................................ 25 1 2 0.50 1 1
...................................................................ACCGATTTCTCCTGGTGTTCA.................................................................................................... 21 0 2 0.50 1 1
.................................................................TGACCGATTTCTCCTGGTGTTCAGT.................................................................................................. 25 1 2 0.50 1 1
.......................................................................................................GAGCACCATTTGAAATCGGT................................................................. 20 1 2 0.50 1 1
.................................................................TGACCGATTTCTCCTGGTGTTCAGAGTCT.............................................................................................. 29 0 2 0.50 1 1
.................................................................TGACCGATTTCTCCTGGTGGTCT.................................................................................................... 23 2 2 0.50 1 1
....................................................................CCGATTTCTCCTGGTGTTCAG................................................................................................... 21 0 2 0.50 1 1
.......................................................................................................TAGCACCATTTGAAATCGGG................................................................. 20 1 2 0.50 1 1
.........................................................................................................GCACCATTTGAAATCGGTTATTG............................................................ 23 2 2 0.50 1 1
..................................................................GACCGATTTCTCCTGGTGT....................................................................................................... 19 0 2 0.50 1 1
......................................................................................................CTAGCACCATTTGAAATCGGT................................................................. 21 0 2 0.50 1 1
..........................................................................................................CACCATTTGAAATCGGTTATGA............................................................ 22 0 2 0.50 1 1
.......................................................................................................TAGCACGATTTGAAATCGGTTAA.............................................................. 23 2 2 0.50 1 1
.......................................................................................................TAGCACCATTGGAAATCGGT................................................................. 20 1 2 0.50 1 1
.......................................................................................................TAGCACTATTTGAAATCGGTTAA.............................................................. 23 2 2 0.50 1 1
.......................................................................................................TAGCACCATTTGAAATCGGATT............................................................... 22 2 2 0.50 1 1
.......................................................................................................TAGCACCATTTGGAATCGGTTGT.............................................................. 23 2 2 0.50 1 1
.......................................................................................................TAGCACCATTTGAAGTCGGTTAC.............................................................. 23 2 2 0.50 1 1
.................................................................TGACCGATTTCTCCTGGTGTTA..................................................................................................... 22 1 2 0.50 1 1
.......................................................................................................TAGCACCATTCGAAATCGGTT................................................................ 21 1 2 0.50 1 1
.......................................................................................................TAGCACCATCTGAAATCGGTTAGGAT........................................................... 26 2 2 0.50 1 1
.......................................................................................................TAGCACCATTTGAAATCGGC................................................................. 20 1 2 0.50 1 1
.......................................................................................................TAGCACCATTTGGAATCGGTTAG.............................................................. 23 2 2 0.50 1 1
.................................................................TGACCGATTTCTCCTGGTGTTCAGAA................................................................................................. 26 1 2 0.50 1 1
.......................................................................................................TAGCACCATATGAAATCGGTTAAG............................................................. 24 2 2 0.50 1 1
.......................................................................................................TAGCACCTTTTGAAATCGGTTACT............................................................. 24 3 2 0.50 1 1
.......................................................................................................TAGCACCATTTGAAATCGGTTATT............................................................. 24 1 2 0.50 1 1
.......................................................................................................TAGCACTATTTGAAATCGGTT................................................................ 21 1 2 0.50 1 1
.......................................................................................................TAGCACCATTTGAAATGGGTTAAG............................................................. 24 2 2 0.50 1 1
......................................................................................................CTAGCACCATTTGAAATCGGTT................................................................ 22 0 2 0.50 1 1
.......................................................................................................TAGCACCATTTGAAATCGGGTAA.............................................................. 23 2 2 0.50 1 1
.......................................................................................................CAGCACCATTTGAAATCGGTTA............................................................... 22 1 2 0.50 1 1
.......................................................................................................TAGCACCATTTGAAATCGGCTAA.............................................................. 23 2 2 0.50 1 1
.......................................................................................................TAGCACCATTTGCAATCGGTTA............................................................... 22 1 2 0.50 1 1
.......................................................................................................TAGCACCATCTGCAATCGGTTAAG............................................................. 24 3 3 0.33 1 1
......................................................................................................CTAGCACCATCTGAAATCGGTTAAG............................................................. 25 2 3 0.33 1 1
.............................................................................................................CATTTGAAATCGGTTAT.............................................................. 17 0 3 0.33 1 1
.......................................................................................................TAGCACCATCTGAAATCGGTTGAG............................................................. 24 3 3 0.33 1 1
.......................................................................................................TAGCACAATGTGAAATCGGTTAT.............................................................. 23 2 3 0.33 1 1
.......................................................................................................TAGCACCATTTGAAATCGGTTAGAC............................................................ 25 3 3 0.33 1 1
......................................................................................................CTAGCACCATGTGAAATCGGTT................................................................ 22 1 3 0.33 1 1
.......................................................................................................TAGCACCATGTGAAATCGGTTAA.............................................................. 23 2 3 0.33 1 1
..................................................................GACCGATTTCTCCTG........................................................................................................... 15 0 3 0.33 1 1
......................................................................................................CTAGCACCATGTGAAATCGGT................................................................. 21 1 3 0.33 1 1
.......................................................................................................TAGCACCATCTGAAATCGGTTAAGA............................................................ 25 2 3 0.33 1 1
.......................................................................................................TAGCACCATATGAAATCGGT................................................................. 20 1 3 0.33 1 1
............................................................................................................CCATTTGAAATCGGTTAA.............................................................. 18 1 3 0.33 1 1
.......................................................................................................TAGCACCATCTGAAATCGGTTAAGG............................................................ 25 3 3 0.33 1 1
.......................................................................................................TAGCACCATTTGAAATCGGTAG............................................................... 22 2 3 0.33 1 1
.......................................................................................................TAGCACGATGTGAAATCGGTT................................................................ 21 2 3 0.33 1 1
............................................................................................................CCATTTGAAATCGGTT................................................................ 16 0 3 0.33 1 1
.......................................................................................................TAGCACCATTTGAAATCGGTTAGAAA........................................................... 26 3 3 0.33 1 1
..............................................................................................................ATTTGAAATCGGTTA............................................................... 15 0 4 0.25 1 1
............................................................................................................CCATTTGAAATCGGT................................................................. 15 0 4 0.25 1 1
.......................................................................................................TAGCACCATATGAAATCGGATAA.............................................................. 23 3 4 0.25 1 1
.......................................................................................................TAGCACCATTTGAAATCGGAA................................................................ 21 2 4 0.25 1 1
.......................................................................................................TAGCACCATCTGAAATCGGTAAAG............................................................. 24 3 4 0.25 1 1
......................................................................................................CTAGCACCATTTGAAATCAGTT................................................................ 22 1 4 0.25 1 1
.......................................................................................................TAGCACCATGTGAAATCGGATA............................................................... 22 2 4 0.25 1 1
.......................................................................................................TAGCACGATGTGAAATCGGATA............................................................... 22 3 4 0.25 1 1
.......................................................................................................TAGCACCATTTGAAATCGGTTTTAT............................................................ 25 3 5 0.20 1 1
.......................................................................................................TAGCACGATGTGAAATCGGGTA............................................................... 22 3 5 0.20 1 1
.......................................................................................................TAGCACGATGTGAAATCGGCTA............................................................... 22 3 5 0.20 1 1
.................................................................TGACCGATTGCTCCTGGTGATCT.................................................................................................... 23 3 5 0.20 1 1
.......................................................................................................TAGCACCATATGAAATCGGG................................................................. 20 2 6 0.17 1 1
.......................................................................................................TAGCACAATGTGAAATCGGTT................................................................ 21 2 6 0.17 1 1
.......................................................................................................TAGCACGATGTGAAATCGGAT................................................................ 21 3 11 0.09 1 1
.......................................................................................................TAGCACGATGTGAAATCGGGT................................................................ 21 3 13 0.08 1 1
.......................................................................................................TAGCACCATTTGAAA...................................................................... 15 0 14 0.07 1 1
.........................................................................................................GCACCATTTGAAATAGGTTACT............................................................. 22 3 15 0.07 1 1
............................................................................................................CCATTTGAAATCGGTTAAA............................................................. 19 2 20 0.05 1 1

Anti-sense strand reads

GAACGGTGGACGTGACAGTTCACGCCGGGGGGTCCTCGTGGTGACCTGGGTAGAGAATGTGTCCGACTGGCTAAAGAGGACCACAAGTCTCAGACAAAAACAGATCGTGGTAAACTTTAGCCAATACTACATCCCCCTTTTCGTCGTCGGAGCTTCGGAGCACGGTTCAGACCAGTCGTTGGGGGACA

************************************************((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).))))))))....**************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:04 PM