ID:

eca-mir-29b-2

 Coordinate:

chr5:30271159-30271239 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.3 -35.3 -35.0
mature

  1. eca-mir-29b  chr4:85327115-85327137 -
  2. eca-mir-29b-2  chr5:30271210-30271232 +
star

Sense Strand Reads

CAGAGGCTGGGTCTTCCGATCGCATCTCCTTTCTTCAGTGAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTGCAGCACAGCAAAGGGCCAACCGCAGAGGAGCTGCTGCTTGT

*********************************************.(((((((((((((((((((((((.((((((.((.((((..............)))))))))))).)))))))))).))))))))).))))...****************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................................................................................................TAGCACCATTTGAAATCAGTGTT......................................................... 23 0 2 27.50 55 55
............................................................CTGGTTTCACATGGTGGCTTAGA.................................................................................................. 23 0 1 5.00 5 5
.....................................................................................................TAGCACCATTTGAAATCAGTGT.......................................................... 22 0 2 5.00 10 10
.....................................................................................................TAGCACCATTTGAAATCAGTCC.......................................................... 22 2 2 4.00 8 8
....................................................................................................CTAGCACCATTTGAAATCAGTGT.......................................................... 23 0 2 3.50 7 7
....................................................................................................CTAGCACCATTTGAAATCAGTG........................................................... 22 0 2 2.50 5 5
....................................................................................................CTAGCACCATTTGAAATCAGT............................................................ 21 0 2 2.00 4 4
.....................................................................................................TAGCACCATTTGAAATCAGTG........................................................... 21 0 2 1.50 3 3
.....................................................................................................TAGCACCATTTGAAATCAGTGTA......................................................... 23 1 2 1.50 3 3
............................................................CTGGTTTCACATGGTGGCTTAGT.................................................................................................. 23 1 1 1.00 1 1
.....................................................................................................TAGCACCATTTGAAATCAGTGA.......................................................... 22 1 2 1.00 2 2
............................................................CTGGTTTCACATGGTGGCTTAT................................................................................................... 22 1 1 1.00 1 1
...........................................................GCTGGTTTCACATGGTGGCTTAGA.................................................................................................. 24 0 1 1.00 1 1
.....................................................................................................TAGCACCATTTGAAATCAGTGTTTA....................................................... 25 1 1 1.00 1 1
..........................TCCTTTCTTCAGTGAGATCCTCTT................................................................................................................................... 24 0 1 1.00 1 1
............................................................CTGGTTTCACATGGTGGCTTAGAT................................................................................................. 24 0 1 1.00 1 1
.....................................................................................................TAGCACCATTTGAAATCGGTAT.......................................................... 22 2 4 0.75 3 3
....................................................................................................CTAGCACCATTTGAAATCAGTGTT......................................................... 24 0 2 0.50 1 1
....................................................................................................CTAGCACCATTTGAAATCAG............................................................. 20 0 2 0.50 1 1
.....................................................................................................TAGCACCATTTGAAATCAGGGTT......................................................... 23 1 2 0.50 1 1
....................................................................................................CTAGCACCATTTGAAATCAGTCC.......................................................... 23 2 2 0.50 1 1
.....................................................................................................TAGCACCATTTGAAATCAGTGTTA........................................................ 24 1 2 0.50 1 1
....................................................................................................CTAGCACCATTTGAAATCAGTGA.......................................................... 23 1 2 0.50 1 1
.....................................................................................................TAGCACCATTTGAAATCAGTGGT......................................................... 23 1 2 0.50 1 1
....................................................................................................CTAGCACCATTTGAAATCAGTC........................................................... 22 1 2 0.50 1 1
....................................................................................................CTAGCACCATTTGAAATCATT............................................................ 21 1 2 0.50 1 1
.....................................................................................................TAGCACCATTTGAAATCAG............................................................. 19 0 2 0.50 1 1
.....................................................................................................TAGCACCATTTGAAATCAGTTT.......................................................... 22 1 2 0.50 1 1
.....................................................................................................TAGCACCATTTGAAATCAGTGTTAA....................................................... 25 2 2 0.50 1 1
.....................................................................................................TAGCACCATTTGAAATCAGTCT.......................................................... 22 1 2 0.50 1 1
.....................................................................................................TAGCACCATTTGAAATCAGTGC.......................................................... 22 1 2 0.50 1 1
.....................................................................................................TAGCACCATTTGAAATCAGTGTTG........................................................ 24 1 2 0.50 1 1
.....................................................................................................TAGCACCATTTGAAATCAGTGTAGA....................................................... 25 3 3 0.33 1 1
.....................................................................................................TAGCACCATTTGAAATCAGTGAA......................................................... 23 2 3 0.33 1 1
....................................................................................................CTAGCACCATTTGAAATCAGTT........................................................... 22 1 4 0.25 1 1
.....................................................................................................TAGCACCATTTGAAATCGGTTTTAT....................................................... 25 3 5 0.20 1 1
.....................................................................................................TAGCACCATTTGAAA................................................................. 15 0 14 0.07 1 1

Anti-sense strand reads

GTCTCCGACCCAGAAGGCTAGCGTAGAGGAAAGAAGTCACTCTAGGAGAAGAAGACCTTCGACCAAAGTGTACCACCGAATCTAAAAAGGTAGAAACATAGATCGTGGTAAACTTTAGTCACAAAATCCTCATTCTTAACGTCGTGTCGTTTCCCGGTTGGCGTCTCCTCGACGACGAACA

******************************************.(((((((((((((((((((((((.((((((.((.((((..............)))))))))))).)))))))))).))))))))).))))...********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:03 PM