ID:

eca-mir-299

 Coordinate:

chr24:42896363-42896425 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.4 -45.4

Sense Strand Reads

TTGTGAACGTGAGCCTTCTTCCACTCGTCACTCCCATCGTGCGGTACTTGAAGAAATGGTTTACCGTCCCACATACATTTTGAGTATGTATGTGGGATGGTAAACCGCTTCTTGGTATCCAGCCCAGCCATCCAAACCATCCCGGAGAGAGCCTGAAGTCAGA

*****************************************.((((((..(((((.((((((((((((((((((((((.......)))))))))))))))))))))).)))))))))))......************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
........................................................................................TATGTGGGATGGTAAACCGCTT..................................................... 22 0 1 138.00 138 138
........................................................................................TATGTGGGATGGTAAACCGCT...................................................... 21 0 1 122.00 122 122
........................................................TGGTTTACCGTCCCACATACAT..................................................................................... 22 0 1 91.00 91 91
........................................................TGGTTTACCGTCCCACATACA...................................................................................... 21 0 1 52.00 52 52
........................................................TGGTTTACCGTCCCACATAC....................................................................................... 20 0 1 51.00 51 51
.......................................................................................GTATGTGGGATGGTAAACCGCT...................................................... 22 0 1 35.00 35 35
.......................................................ATGGTTTACCGTCCCACATACA...................................................................................... 22 0 1 22.00 22 22
........................................................................................TATGTGGGATGGTAAACCGC....................................................... 20 0 1 19.00 19 19
........................................................................................TATGTGGGATGGTAAACCGCTTA.................................................... 23 1 1 17.00 17 17
.......................................................ATGGTTTACCGTCCCACATAC....................................................................................... 21 0 1 13.00 13 13
.......................................................ATGGTTTACCGTCCCACATACT...................................................................................... 22 1 1 10.00 10 10
........................................................................................TATGTGGGATGGTAAACCGCTTT.................................................... 23 1 1 10.00 10 10
.......................................................................................GTATGTGGGATGGTAAACCGC....................................................... 21 0 1 9.00 9 9
........................................................TGGTTTACCGTCCCACATACAC..................................................................................... 22 1 1 7.00 7 7
........................................................TGGTTTACCGTCCCACATACT...................................................................................... 21 1 1 6.00 6 6
........................................................................................TATGTGGGATGGTAAACCG........................................................ 19 0 1 4.00 4 4
........................................................................................TATGTGGGATGGTAAACCGCA...................................................... 21 1 1 4.00 4 4
........................................................................................TATGTGGGATGGTAAACCGA....................................................... 20 1 1 3.00 3 3
........................................................................................TATGTGGGATGGTAAACCGCTG..................................................... 22 1 1 3.00 3 3
........................................................TGGTTTACCGTCCCACGTACAT..................................................................................... 22 1 1 3.00 3 3
........................................................................................TATGTGGGATGGTAAAACGCT...................................................... 21 1 1 2.00 2 2
.......................................................ATGGTTTACCGTCCCACATA........................................................................................ 20 0 1 2.00 2 2
........................................................................................TATGTGGGATGGTAAACCGGTT..................................................... 22 1 1 2.00 2 2
.......................................................................................GTATGTGGGATGGTAAACCG........................................................ 20 0 1 2.00 2 2
........................................................................................TATGTGGGATGGTAAACCGATA..................................................... 22 2 1 2.00 2 2
........................................................TGGTTTACCGTCACACATACAT..................................................................................... 22 1 1 2.00 2 2
.......................................................................................GTATGTGGGATGGTAAACCGCTT..................................................... 23 0 1 2.00 2 2
........................................................TGGTTTACCGTCCCACATAA....................................................................................... 20 1 1 2.00 2 2
........................................................................................TGTGTGGGATGGTAAACCGCT...................................................... 21 1 1 2.00 2 2
........................................................TGGTTTACCGTCCCACATA........................................................................................ 19 0 1 2.00 2 2
........................................................TGGTTTACCGTCCCACATACAA..................................................................................... 22 1 1 2.00 2 2
........................................................................................TATGTGGGATGGTAAACCGCTTTA................................................... 24 2 1 2.00 2 2
........................................................TGGTTTACCGTCCCACATACATT.................................................................................... 23 0 1 2.00 2 2
.......................................................................................GTATGTGGGATGGTAAACCGCC...................................................... 22 1 1 1.00 1 1
........................................................................................TATGTGGGATGGTAAACCGCTA..................................................... 22 1 1 1.00 1 1
........................................................................................TATGTGGGATGGTAGACCGCT...................................................... 21 1 1 1.00 1 1
........................................................................................TATGTGGGATGCTAAACCGCTT..................................................... 22 1 1 1.00 1 1
........................................................................................TATGTGGGATGGTAAACCGCTTAGA.................................................. 25 3 1 1.00 1 1
........................................................................................TATGTGGGATGGTAAACCGCTAA.................................................... 23 2 1 1.00 1 1
........................................................TGGTTTACCGCCCCACATACAT..................................................................................... 22 1 1 1.00 1 1
........................................................TGGTTTGCCGTCCCACATAGAT..................................................................................... 22 2 1 1.00 1 1
.......................................................................................GTATGTGGGATGGTAAACC......................................................... 19 0 1 1.00 1 1
........................................................................................GATGTGGGATGGTAAACCGCTTA.................................................... 23 2 1 1.00 1 1
.......................................................................................GTATGTGGGATGGTAAACCGCAAT.................................................... 24 3 1 1.00 1 1
........................................................TGGTTTACCGTCACACATAAAT..................................................................................... 22 2 1 1.00 1 1
........................................................................................TATGTGGGATGGTAAAGCGCT...................................................... 21 1 1 1.00 1 1
........................................................................................TATGTGGGATGGTAAAGCGCTTT.................................................... 23 2 1 1.00 1 1
........................................................................................TATGTGGGATGGGAAACCGCT...................................................... 21 1 1 1.00 1 1
.........................................................................................ATGTGGGATGGTAAACCGCTT..................................................... 21 0 1 1.00 1 1
........................................................................................TATGTGGGAGGGTAAACCGCTT..................................................... 22 1 1 1.00 1 1
........................................................................................TATGTGGGATGGTAAACCGCTCT.................................................... 23 2 1 1.00 1 1
........................................................TGGTTTACCGTCCCACATAGA...................................................................................... 21 1 1 1.00 1 1
........................................................................................TATGTGGGACGGTAAACCGCT...................................................... 21 1 1 1.00 1 1
........................................................................................TATGGGGGATGGTAAACCGCTT..................................................... 22 1 1 1.00 1 1
........................................................................................TATGTGGGATGGTAAACCGCTTACT.................................................. 25 2 1 1.00 1 1
.......................................................................................GTATGTGGGATGGTAAACCCCT...................................................... 22 1 1 1.00 1 1
........................................................................................TATGTGGGATGGGAAACCGCTT..................................................... 22 1 1 1.00 1 1
.......................................................................................CTATGTGGGATGGTAAACCGCT...................................................... 22 1 1 1.00 1 1
........................................................................................TATGTGCGATGGTAAACCGC....................................................... 20 1 1 1.00 1 1
.......................................................GTGGTTTACCGTCCCACATAC....................................................................................... 21 1 1 1.00 1 1
.......................................................................................GTATGTGGGATGGTAAACCGAT...................................................... 22 1 1 1.00 1 1
........................................................................................TATGTGGGATGGTAAACCGCTAT.................................................... 23 2 1 1.00 1 1
........................................................TGGTTTACCGTCCCACATATA...................................................................................... 21 1 1 1.00 1 1
........................................................TGGTTTACCGTCCCACATAGAT..................................................................................... 22 1 1 1.00 1 1
........................................................................................TATGTGGGATGTTAAACCGCT...................................................... 21 1 1 1.00 1 1
........................................................TGGTTTACCGTCGCGCATACAT..................................................................................... 22 2 1 1.00 1 1
........................................................TGGTTTACCGTCCCACATACACT.................................................................................... 23 1 1 1.00 1 1
.......................................................CTGGTTTACCGTCCCACATA........................................................................................ 20 1 1 1.00 1 1
........................................................................................TATGTGGGATGGTAAACCGCTC..................................................... 22 1 1 1.00 1 1
.......................................................................................GTATGTGGGATGGTAAACCGA....................................................... 21 1 1 1.00 1 1
........................................................................................TATGTGGGAGGGTAAACCGCTTA.................................................... 23 2 1 1.00 1 1
........................................................TGGTTTACCGTCCCACATAAA...................................................................................... 21 1 1 1.00 1 1
........................................................................................TATGTGGGATGGTAAACCGGTTT.................................................... 23 2 1 1.00 1 1
........................................................TGGTTTACCGTCCCACATACATTTTGAGTAT............................................................................ 31 0 1 1.00 1 1
........................................................................................TATGTGGGATGGTAAACCGCTTTT................................................... 24 1 1 1.00 1 1
........................................................................................TATGTGGGATGGTAAACCGCTTC.................................................... 23 0 1 1.00 1 1
........................................................................................TATGTGGGAGGGTAAACCGCTTGT................................................... 24 2 1 1.00 1 1
........................................................TGGTTTACCATCCCACATACAT..................................................................................... 22 1 2 0.50 1 1
........................................................................................TATGTGGGACGGTAAACCGGTT..................................................... 22 2 2 0.50 1 1
........................................................................................TATGTGGGATGGTAGAGCGCT...................................................... 21 2 2 0.50 1 1
.......................................................................................GTGTGTGGGATGGTAAACCGCA...................................................... 22 2 2 0.50 1 1
........................................................................................TATGTGGGATGGTAAACCGATAT.................................................... 23 3 2 0.50 1 1
.......................................................................................GTATGTGGGATGGTAAACCGAAA..................................................... 23 3 2 0.50 1 1
........................................................................................TATGTGGGAAGGTAAACCGGTT..................................................... 22 2 2 0.50 1 1
........................................................................................TATGTGGGATGGTAAACT......................................................... 18 1 3 0.33 1 1
........................................................TGGTTTACCGTCCCACATAGAAA.................................................................................... 23 3 7 0.14 1 1
........................................................................................TATGTGCGAGGGTAAACCGGT...................................................... 21 3 7 0.14 1 1
........................................................TGGTTTCCCGTCCCACATAA....................................................................................... 20 2 8 0.13 1 1
........................................................................................TATGTGGGATGGTAAACCGAGA..................................................... 22 3 9 0.11 1 1
........................................................................................TATGTGAGAGGGTAAACCGATT..................................................... 22 3 9 0.11 1 1

Anti-sense strand reads

AACACTTGCACTCGGAAGAAGGTGAGCAGTGAGGGTAGCACGCCATGAACTTCTTTACCAAATGGCAGGGTGTATGTAAAACTCATACATACACCCTACCATTTGGCGAAGAACCATAGGTCGGGTCGGTAGGTTTGGTAGGGCCTCTCTCGGACTTCAGTCT

**************************************.((((((..(((((.((((((((((((((((((((((.......)))))))))))))))))))))).)))))))))))......***************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................................................TTGGCCAAATGGCAGGGTGTAT........................................................................................ 22 2 2 0.50 1 1
.....................................................................................TACATACACCCTACCATTTGGT........................................................ 22 1 2 0.50 1 1

Generated: 09/01/2015 at 11:54 AM