ID:

eca-mir-296

 Coordinate:

chr22:45210449-45210526 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.9 -40.8 -40.7

Sense Strand Reads

GCAGGGCTGGGAGGGGGTGTGTTAGCACAGCCTTGTGTGGGAGATGATGCAGGACTCTTCCGGAGGGCCCCCCCCAATCCTGTTGTGTTTGATTCAGAGGGTTGGGTGGAGGCTTTCCTGAAGGCTCTGAGAAGAGCTGCACCCACAGGCTGCATGGTCAGGAGGTGGGATGTGAGGA

***********************************************..((((..(((((.((((((((.(((((((((((.(((.........)))))))))))).)).)))))))).))))).)))).....******************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.................................................................................................AGGGTTGGGTGGAGGCTTTCCT........................................................... 22 0 1 9.00 9 9
..............................................................GAGGGCCCCCCCCAATCCTGT............................................................................................... 21 0 1 8.00 8 8
...............................................................AGGGCCCCCCCCAATCCTGTTGT............................................................................................ 23 0 1 3.00 3 3
.................................................................................................AGGGTTGGGTGGAGGCTTTCCA........................................................... 22 1 1 3.00 3 3
..............................................................GAGGGCCCCCCCCAATCCTGC............................................................................................... 21 1 2 2.00 4 4
.................................................................................................AGGGTTGGGTGGAGGCTTTCC............................................................ 21 0 1 2.00 2 2
...............................................................AGGGCCCCCCCCAATCCTGTTG............................................................................................. 22 0 1 2.00 2 2
..............................................................GAGGGCCCCCCCCAATCCTGTT.............................................................................................. 22 0 1 1.00 1 1
..............................................................GAGGGCCCCCCCCAATCCTGTA.............................................................................................. 22 1 1 1.00 1 1
..............................................................GAGGGCCCCCCCCAATCCTGA............................................................................................... 21 1 1 1.00 1 1
.................................................................................................CGGGTTGGGTGGAGGCTTTCCT........................................................... 22 1 1 1.00 1 1
.................................................................................................AGGGTTGGGTGGAGGCTTTCCAAA......................................................... 24 2 1 1.00 1 1
.............................................................................TCCTGTTGTGTTTGATTCAGAGGGTTGGG........................................................................ 29 0 1 1.00 1 1
.................................................................................................AGGGTTGGGTGGAGGCTTTCCTAAT........................................................ 25 2 1 1.00 1 1
.................................................................................................AGGGGTGGGTGGAGGCTTTCCTTA......................................................... 24 2 1 1.00 1 1
.................................................................................................AGGGTTGGGTGGAGGCTTTCCTT.......................................................... 23 1 1 1.00 1 1
.................................................................................................AGGGTTGGGTGGAGGCTTTCCTG.......................................................... 23 0 1 1.00 1 1
.......................................................................................................................GAAGGCTCTGAGAAGAGCTGCACCCA................................. 26 0 1 1.00 1 1
.................................................................................................AGGGTTGGGTGGAGGCTTTCCTAT......................................................... 24 2 1 1.00 1 1
.................................................................................................AGGGTTGGGTGGAGGCTTTCTTAAA........................................................ 25 2 1 1.00 1 1

Anti-sense strand reads

CGTCCCGACCCTCCCCCACACAATCGTGTCGGAACACACCCTCTACTACGTCCTGAGAAGGCCTCCCGGGGGGGGTTAGGACAACACAAACTAAGTCTCCCAACCCACCTCCGAAAGGACTTCCGAGACTCTTCTCGACGTGGGTGTCCGACGTACCAGTCCTCCACCCTACACTCCT

********************************************..((((..(((((.((((((((.(((((((((((.(((.........)))))))))))).)).)))))))).))))).)))).....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:51 AM