ID:

eca-mir-24-1

 Coordinate:

chr7:44930163-44930230 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.0
mature

  1. eca-mir-24-1  chr7:44930206-44930225 +
  2. eca-mir-24-2  chr23:2317182-2317201 -
star

Sense Strand Reads

GCCCTGCCTCGCGCCGCGCCACCGCTGCCCCGTGCCTCCCCGGGCTCTGCCTCCCGTGCCTACTGAGCTGAAACACAGTTGGTTTGTGCAGACTGGCTCAGTTCAGCAGGAACAGGAGTCAAGCCCCCTTGGAGCCTGCAGCCCCTCGCCCGCCTTGGGTGGGCTGAT

***************************************..(((((.((.((((.((.(((.(((((((((....(((((.((....)).)))))..))))))))).))).)).)))).)))))))..**************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.............................................................................................TGGCTCAGTTCAGCAGGAAC....................................................... 20 0 2 744.00 1488 1488
.............................................................................................TGGCTCAGTTCAGCAGGAACAGT.................................................... 23 1 2 312.50 625 625
.............................................................................................TGGCTCAGTTCAGCAGGAACA...................................................... 21 0 2 111.00 222 222
.............................................................................................TGGCTCAGTTCAGCAGGAACAG..................................................... 22 0 2 69.00 138 138
.............................................................................................TGGCTCAGTTCAGCAGGAACAGA.................................................... 23 1 2 67.00 134 134
......................................................CGTGCCTACTGAGCTGAAACACAGT......................................................................................... 25 0 1 24.00 24 24
............................................................................................CTGGCTCAGTTCAGCAGGAAC....................................................... 21 0 2 22.00 44 44
.......................................................GTGCCTACTGAGCTGAAACACAGT......................................................................................... 24 0 1 20.00 20 20
........................................................TGCCTACTGAGCTGAAACACAGT......................................................................................... 23 0 1 18.00 18 18
.............................................................................................TGGCTCAGTTCAGCAGGAACT...................................................... 21 1 2 17.00 34 34
.......................................................GTGCCTACTGAGCTGAAACACAG.......................................................................................... 23 0 1 16.00 16 16
.............................................................................................TGGCTCAGTTCAGCAGGAAA....................................................... 20 1 3 15.33 46 46
.............................................................................................TGGCTCAGTTCAGCAGGAACAGTT................................................... 24 2 2 14.00 28 28
.......................................................GTGCCTACTGAGCTGAAACACA........................................................................................... 22 0 1 12.00 12 12
.............................................................................................TGGCTCAGTTCAGCAGGAAT....................................................... 20 1 2 10.50 21 21
......................................................CGTGCCTACTGAGCTGAAACAC............................................................................................ 22 0 1 9.00 9 9
......................................................CGTGCCTACTGAGCTGAAACACA........................................................................................... 23 0 1 9.00 9 9
......................................................CGTGCCTACTGAGCTGAAACACAG.......................................................................................... 24 0 1 8.00 8 8
.............................................................................................TGGCTCAGTTCAGCAGGAACACT.................................................... 23 2 3 6.33 19 19
........................................................TGCCTACTGAGCTGAAACACAG.......................................................................................... 22 0 1 6.00 6 6
.............................................................................................TGGCTCAGTTCAGCAGGAACAGTA................................................... 24 1 2 5.00 10 10
.............................................................................................TGGCTCAGTTCAGCGGGAAC....................................................... 20 1 2 4.00 8 8
.............................................................................................TGGCTCAGTTCAGCAGGAA........................................................ 19 0 2 4.00 8 8
.......................................................GTGCCTACTGAGCTGAAACAC............................................................................................ 21 0 1 4.00 4 4
.............................................................................................TGGCTCAGTTCAGCAGGAC........................................................ 19 1 4 3.75 15 15
..............................................................................................GGCTCAGTTCAGCAGGAACAGT.................................................... 22 1 2 3.50 7 7
.............................................................................................TGGCTCAGTTCGGCAGGAAC....................................................... 20 1 2 3.00 6 6
.............................................................................................TGGCTCAGTTCAGCAGGAACAA..................................................... 22 1 2 2.50 5 5
.............................................................................................TGGCTCAGTTCAGCAGGAACAC..................................................... 22 1 2 2.50 5 5
.............................................................................................TGGCTCAGTTCAGCGGGAACAGT.................................................... 23 2 2 2.50 5 5
.............................................................................................TGGCTCAGTTCAGCAGGAAG....................................................... 20 1 3 2.33 7 7
.............................................................................................TGGCTCAGTTCAACAGGAAC....................................................... 20 1 2 2.00 4 4
.............................................................................................TGGCTCAGTTCGGCAGGAACA...................................................... 21 1 2 2.00 4 4
.............................................................................................TGGCTCAGTTCAGTAGGAAC....................................................... 20 1 2 2.00 4 4
...............................................................................................GCTCAGTTCAGCAGGAACAGT.................................................... 21 1 2 2.00 4 4
.......................................................GTGCCTGCTGAGCTGAAACACAA.......................................................................................... 23 2 1 2.00 2 2
..............................................................................................GGCTCAGTTCAGCAGGAAC....................................................... 19 0 2 2.00 4 4
.............................................................................................TGGCTCAGTTCAGCAGGAACATT.................................................... 23 2 3 2.00 6 6
.............................................................................................TGGCTCAGTTCAGCAGGAAAA...................................................... 21 1 3 2.00 6 6
......................................................CGTGCCTACTGAGCTGAAACACT........................................................................................... 23 1 1 2.00 2 2
.............................................................................................TGGCTCAGTTCAGCAGGAACAT..................................................... 22 1 2 1.50 3 3
.............................................................................................TGGCTCAGTTCAGCAGGAACAGAA................................................... 24 1 2 1.50 3 3
.............................................................................................TGGCTCAGTTCAGCAGGAACGG..................................................... 22 1 2 1.50 3 3
......................................................CGTGCCTACTGAGCTGAAACA............................................................................................. 21 0 1 1.00 1 1
.......................................................GTGCCTACTGGGCTGAAACACA........................................................................................... 22 1 1 1.00 1 1
.......................................................GTGCCTACTGAGCTGAAACT............................................................................................. 20 1 1 1.00 1 1
........................................................TGCCTGCTGAGCTGAAACACAGT......................................................................................... 23 1 1 1.00 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAGC....................................................... 20 1 3 1.00 3 3
............................................................................................CTGGCTCAGTTCAGCAGGAACA...................................................... 22 0 2 1.00 2 2
......................................................CGTGCCTGCTGAGCTGAAACACAGT......................................................................................... 25 1 1 1.00 1 1
.......................................................GTGCCTACTGAGCTGAAACGCAGT......................................................................................... 24 1 1 1.00 1 1
.......................................................GTGCCTACTGAGCTGAGACACAG.......................................................................................... 23 1 1 1.00 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAACAGTAA.................................................. 25 2 2 1.00 2 2
......................................................CGTGCCTACTGAGCTGAAACAAAGT......................................................................................... 25 1 1 1.00 1 1
........................................................TGCCTAGTGGGCTGAAACACAGT......................................................................................... 23 2 1 1.00 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAAGA...................................................... 21 1 2 1.00 2 2
............................................................................................CTGGCTCAGTTAAGCAGGAAC....................................................... 21 1 2 1.00 2 2
.............................................................................................TGGCTCAGTTCAGCAGGA......................................................... 18 0 3 1.00 3 3
........................................................TGCCTACTGAGCTGAAACACAGTT........................................................................................ 24 0 1 1.00 1 1
.............................................................................................TGGCTCAGTTTAGCAGGAAC....................................................... 20 1 3 1.00 3 3
.......................................................GTGCCTACTGAGCTGAAACGCAG.......................................................................................... 23 1 1 1.00 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAACAGAAT.................................................. 25 2 2 1.00 2 2
..............................................................................................GGCTCAGTTCAGCAGGAACAGA.................................................... 22 1 2 1.00 2 2
........................................................TGCCTACTGAGCAGAAACACAGT......................................................................................... 23 1 1 1.00 1 1
......................................................CGTGCCTGCTGAGCTGAAACACA........................................................................................... 23 1 1 1.00 1 1
.......................................................GTGCCTGCTGAGCTGAAACACAGA......................................................................................... 24 2 1 1.00 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAACAGG.................................................... 23 0 2 1.00 2 2
......................................................CGTGCCTACTGAGCTGAAACT............................................................................................. 21 1 1 1.00 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAAAAGT.................................................... 23 2 2 1.00 2 2
.............................................................................................TGGCTCAGTTCAGCAGGAATA...................................................... 21 1 2 1.00 2 2
.............................................................................................TGGCTCAGTTCGGCAGGAACAGA.................................................... 23 2 2 1.00 2 2
.............................................................................................TGGCTCAGTTCAGCAGGAACGGT.................................................... 23 2 3 0.67 2 2
.............................................................................................TGGCTCAGTGCAGCAGGAAC....................................................... 20 1 3 0.67 2 2
.............................................................................................TGGCTCAGTTCAGCAGGAAGAGT.................................................... 23 2 3 0.67 2 2
.............................................................................................TGGCTCAGTTCAGCAGGAACACA.................................................... 23 2 3 0.67 2 2
............................................................................................CTGGCTCAGTTCAGCAGGAAT....................................................... 21 1 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAACAAT.................................................... 23 2 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAACACG.................................................... 23 1 2 0.50 1 1
............................................................................................ATGGCTCAGTTCAGCAGGAAC....................................................... 21 1 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAACGGA.................................................... 23 2 2 0.50 1 1
.............................................................................................TGGCTCTGTTCAGCAGGAACAGT.................................................... 23 2 2 0.50 1 1
.............................................................................................TGGCTCAGTCCAGCAGGAAC....................................................... 20 1 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGAAAC....................................................... 20 1 4 0.50 2 2
.............................................................................................TGGCTCAGTTCAGCGGGAACA...................................................... 21 1 2 0.50 1 1
............................................................................................CTGGCTCAGTTCAGCAGGAAA....................................................... 21 1 2 0.50 1 1
...............................................................................................GCTCAGTTCAGCAGGAACAGTT................................................... 22 2 4 0.50 2 2
.............................................................................................GGGCTCAGTTCAGCAGGAAC....................................................... 20 1 2 0.50 1 1
............................................................................................CTGGCTCAGTTCAGCAGGAA........................................................ 20 0 2 0.50 1 1
.............................................................................................TGGCTCAGTTCGGCAGGAACAG..................................................... 22 1 2 0.50 1 1
.............................................................................................TGGCTCGGTTCAGCAGGAACAGT.................................................... 23 2 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAACAGC.................................................... 23 1 2 0.50 1 1
.............................................................................................GGGCTCAGTTCAGCAGGAACAGT.................................................... 23 2 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAACG...................................................... 21 1 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAACGGG.................................................... 23 1 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCGGGAACAGA.................................................... 23 2 2 0.50 1 1
.............................................................................................TGGCTCAGTTGAGCAGGAACAGT.................................................... 23 2 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAACAGGTAA................................................. 26 3 2 0.50 1 1
............................................................................................CTGGCTCAGTTCAGCAGGAACAGT.................................................... 24 1 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAGCAGT.................................................... 23 2 2 0.50 1 1
............................................................................................CTGGCTCAGTTGAGCAAGAAC....................................................... 21 2 2 0.50 1 1
.............................................................................................AGGCTCAGTTCAGCAGGAACA...................................................... 21 1 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAACAGGT................................................... 24 1 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGTAACAG..................................................... 22 1 2 0.50 1 1
.............................................................................................TGGCTCGGTTCAGCAGGAACAGA.................................................... 23 2 4 0.50 2 2
.............................................................................................TGGCTCGGTTCAGCAGGAAC....................................................... 20 1 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAAGAG..................................................... 22 1 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAACAAGA................................................... 24 1 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAACTT..................................................... 22 2 4 0.50 2 2
............................................................................................CTGGCTCAGTTCAGCAGGAACAA..................................................... 23 1 2 0.50 1 1
.............................................................................................TGGCTCGGTACAGCAGGAACAGT.................................................... 23 3 2 0.50 1 1
.............................................................................................CGGCTCAGTTCAGCAGGAAC....................................................... 20 1 2 0.50 1 1
.............................................................................................TGGCTCAGTTGAGCAGGAACA...................................................... 21 1 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAACAGGA................................................... 24 0 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAAAAG..................................................... 22 1 2 0.50 1 1
.............................................................................................TGGCTCAGGTCAGCAGGAAC....................................................... 20 1 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAACAGGAACAGT.................................................... 23 2 2 0.50 1 1
...............................................................................................GCTCAGTTCAGCAGGAACAGG.................................................... 21 0 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAACAGAT................................................... 24 2 2 0.50 1 1
.............................................................................................TGGCTCAGTTCAGCAGGTA........................................................ 19 1 2 0.50 1 1
............................................................................................CTGGCTCAGTTCAGCAGGAACAG..................................................... 23 0 2 0.50 1 1
............................................................................................CTGGCTCAGTTCAGCAGGAACAGA.................................................... 24 1 2 0.50 1 1
.................................................................................................TCAGTTCAGCAGGAAC....................................................... 16 0 3 0.33 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAAGAGA.................................................... 23 2 3 0.33 1 1
.............................................................................................TGGGTCAGTTCAGCAGGAAC....................................................... 20 1 3 0.33 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAAAAGA.................................................... 23 2 3 0.33 1 1
.............................................................................................TGGCTCAGTTCACCAGGAACAGT.................................................... 23 2 3 0.33 1 1
............................................................................................CTGGCTCAGTTCAGCAGGAGC....................................................... 21 1 3 0.33 1 1
.............................................................................................TGGCTCGGTCCAGCAGGAACAGT.................................................... 23 3 3 0.33 1 1
.............................................................................................TGGCTCAGTGCAGCAGGAAAAGT.................................................... 23 3 7 0.29 2 2
.............................................................................................TGGCTCAGTTCGGCAGGAAA....................................................... 20 2 7 0.29 2 2
.............................................................................................TGGCTCAGTTCTGCAGGAACAGT.................................................... 23 2 4 0.25 1 1
.............................................................................................TGGCTCAGCTCAGCAGGAAC....................................................... 20 1 4 0.25 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAAAAT..................................................... 22 2 4 0.25 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAAAT...................................................... 21 2 8 0.25 2 2
.............................................................................................TGGCTCAGCTCAGCAGGAACA...................................................... 21 1 4 0.25 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAGCAGTT................................................... 24 3 5 0.20 1 1
.............................................................................................TGGCTCAGTTCAACAGGAACAGAT................................................... 24 3 5 0.20 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAATT...................................................... 21 2 5 0.20 1 1
.............................................................................................TGGCTCAGTTCAGCAGGATTA...................................................... 21 2 5 0.20 1 1
.............................................................................................TGGCTCAGTTCAGCGGGAACACT.................................................... 23 3 5 0.20 1 1
.............................................................................................TGGCTCGGTCCAGCAGGAAC....................................................... 20 2 5 0.20 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAAAC...................................................... 21 2 5 0.20 1 1
.............................................................................................TGGCTCAGTTCGGCAGGAACAAT.................................................... 23 3 6 0.17 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAAAG...................................................... 21 2 6 0.17 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAG........................................................ 19 1 6 0.17 1 1
.............................................................................................TGGCTCAGTTGAGCAGGAAAA...................................................... 21 2 7 0.14 1 1
.............................................................................................TGGCTCAGTTCAGCAGGAACACCT................................................... 24 3 7 0.14 1 1
.............................................................................................TGGCTCCGTGCAGCAGGAACAGA.................................................... 23 3 7 0.14 1 1
.............................................................................................TGGCTCAGTTCAGCAGGATAA...................................................... 21 2 8 0.13 1 1
.............................................................................................TGGCTCAGTCCAGCAGGAAAA...................................................... 21 2 9 0.11 1 1
.............................................................................................TGGCTCAGTGCAGCAGGAAGAGT.................................................... 23 3 18 0.11 2 2
.............................................................................................TGGCTCTGTGCAGCAGGAACAGT.................................................... 23 3 12 0.08 1 1
.............................................................................................TGACTCAGTTCAGCAGGAAT....................................................... 20 2 15 0.07 1 1
.............................................................................................TGGCTCAGTCCAGCAGGAAA....................................................... 20 2 19 0.05 1 1
.............................................................................................TGGCTCAGTGCAGCAGGAAA....................................................... 20 2 20 0.05 1 1
.............................................................................................TGGCTCAGTACAGCAGGAAAAGA.................................................... 23 3 20 0.05 1 1

Anti-sense strand reads

CGGGACGGAGCGCGGCGCGGTGGCGACGGGGCACGGAGGGGCCCGAGACGGAGGGCACGGATGACTCGACTTTGTGTCAACCAAACACGTCTGACCGAGTCAAGTCGTCCTTGTCCTCAGTTCGGGGGAACCTCGGACGTCGGGGAGCGGGCGGAACCCACCCGACTA

****************************************..(((((.((.((((.((.(((.(((((((((....(((((.((....)).)))))..))))))))).))).)).)))).)))))))..*************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...........................................................................................TGACCGAGTCAAGTCGTCCTT........................................................ 21 0 2 0.50 1 1

Generated: 09/01/2015 at 12:07 PM