ID:

eca-mir-23a

 Coordinate:

chr7:44929817-44929889 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.8 -38.8 -38.1

Sense Strand Reads

CCCCAGGTGCCAGCCGCTGGCCCCACCCAGTGCCCCCACCCCTCTGCCACGGCCGGCTGGGGTTCCTGGGGATGGGATTTGCTGCTTGTCACAAATCACATTGCCAGGGATTTCCAACCGACCCTGTGCCCTGCCTCTGGGGccgccgccaccaccaccaccatcaccaccac

***********************************..........((((.((.(((.((((((((((((.((((.((((((.((.....)))))))).)))).))))))).))))).))).)).)).)).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..............................................................................................ATCACATTGCCAGGGATTTCC.......................................................... 21 0 1 897.00 897 897
..............................................................................................ATCACATTGCCAGGGATTTCCA......................................................... 22 0 1 225.00 225 225
..............................................................................................CTCACATTGCCAGGGATTTCC.......................................................... 21 1 1 84.00 84 84
..............................................................................................ATCACATTGCCAGGGATTTC........................................................... 20 0 1 62.00 62 62
..............................................................................................ATCACATTGCCAGGGATTTCCT......................................................... 22 1 1 42.00 42 42
..............................................................................................ATCACATTGCCAGGGATTTCCAT........................................................ 23 1 1 41.00 41 41
..............................................................................................ATCACATTGCCAGGGATTTCCAA........................................................ 23 0 1 35.00 35 35
..............................................................................................ATCACATTGCCAGGGATTT............................................................ 19 0 1 16.00 16 16
..............................................................................................ATCACATTGTCAGGGATTTCC.......................................................... 21 1 2 15.00 30 30
..............................................................................................ATCACATTGCCAGGGATTTCCAAT....................................................... 24 1 1 14.00 14 14
..............................................................................................ATCACATTGCCAGGGATTTAC.......................................................... 21 1 1 14.00 14 14
..............................................................................................CTCACATTGCCAGGGATTTCCA......................................................... 22 1 1 13.00 13 13
..............................................................................................ATCACATTGCCAGGGATT............................................................. 18 0 2 10.50 21 21
..............................................................................................ATCACATTGCCAGGGATTTCT.......................................................... 21 1 1 8.00 8 8
..............................................................................................ATCGCATTGCCAGGGATTTCC.......................................................... 21 1 1 6.00 6 6
..............................................................................................ATCACATTGCCAGGGATTTCA.......................................................... 21 1 1 5.00 5 5
..............................................................................................ATCACATTGCCAGGGATTACCAA........................................................ 23 1 2 4.50 9 9
..............................................................................................CTCACATTGCCAGGGATTTCCT......................................................... 22 2 2 3.50 7 7
..............................................................................................ATCACATTGCCAGGGATTTCCAATT...................................................... 25 2 1 3.00 3 3
..............................................................................................TTCACATTGCCAGGGATTTCC.......................................................... 21 1 1 3.00 3 3
..............................................................................................ATCACATTGCCAGGGAATTCC.......................................................... 21 1 1 3.00 3 3
..............................................................................................ATCACATTGCCGGGGATTTCC.......................................................... 21 1 1 3.00 3 3
.............................................................................................AATCACATTGCCAGGGATTTCC.......................................................... 22 0 1 3.00 3 3
..............................................................................................ATCACATTGCCAGGGATTTCCATT....................................................... 24 2 1 3.00 3 3
..............................................................................................CTCACATTGCCAGGGATTTCCAA........................................................ 23 1 1 3.00 3 3
..............................................................................................ATCACATTGCCAGGGAT.............................................................. 17 0 2 2.50 5 5
..............................................................................................ATCACATTGCCAGGGAGTTCC.......................................................... 21 1 1 2.00 2 2
..............................................................................................ATCACATTGCCAGGGATTTT........................................................... 20 1 1 2.00 2 2
..............................................................................................ATCACATTGCCAGGGAATTCCA......................................................... 22 1 1 2.00 2 2
...............................................................................................TCACATTGCCAGGGATTTCC.......................................................... 20 0 1 2.00 2 2
..............................................................................................ATCACATTGCCAGGGATTTCG.......................................................... 21 1 1 2.00 2 2
..............................................................................................ATCACATTGCCAGGGATTTTC.......................................................... 21 1 1 2.00 2 2
..............................................................................................CTCACATTGCCAGGGATTTCCAT........................................................ 23 2 1 2.00 2 2
..............................................................................................ATCACATTGCCAGGGATTTCCAAAA...................................................... 25 2 1 2.00 2 2
..............................................................................................ATCACATTGCCAGGGATTTCCAAAAA..................................................... 26 3 1 2.00 2 2
..............................................................................................ATCACATTGCCAGGGATTTCCG......................................................... 22 1 1 2.00 2 2
..............................................................................................ATCACATTGCCAGGGATTTCCGA........................................................ 23 1 1 2.00 2 2
..............................................................................................ATCACATTGCCAGGGATTTCCAAA....................................................... 24 1 1 2.00 2 2
..............................................................................................ATCACATTGCCAGGGATTTA........................................................... 20 1 2 2.00 4 4
..............................................................................................ATCACATTGCCAGGGATTTGC.......................................................... 21 1 2 2.00 4 4
..............................................................................................ATCACATTGCCAGGGAGTTCCAA........................................................ 23 1 1 2.00 2 2
..............................................................................................ATCACATTGCCAGGGATTTCCAC........................................................ 23 1 2 1.50 3 3
..............................................................................................ATCACATTGCCAGGGACTTCC.......................................................... 21 1 1 1.00 1 1
..............................................................................................ATCACATTGCCAGGGATTTCGAT........................................................ 23 2 1 1.00 1 1
..............................................................................................ATCACATTGCCAGGGAGTTCCA......................................................... 22 1 1 1.00 1 1
..........................................................................................CCGCATCACATTGCCAGGGATTTCC.......................................................... 25 3 1 1.00 1 1
..............................................................................................ATCACACTGCCAGGGATTTCC.......................................................... 21 1 1 1.00 1 1
..............................................................................................ATCACACTGCCAGGGATTTC........................................................... 20 1 1 1.00 1 1
..............................................................................................ATCACATTGCTAGGGATTTC........................................................... 20 1 1 1.00 1 1
..............................................................................................ATCACATTGCCAGGGATTTCCAAGT...................................................... 25 2 1 1.00 1 1
..............................................................................................ATCACATTGCCACGGATTTCCAA........................................................ 23 1 1 1.00 1 1
..............................................................................................ATCACATTGCCAGGGATTTCCAATA...................................................... 25 2 1 1.00 1 1
..............................................................................................ATCACATTGCCGGGGATTTCCAAAA...................................................... 25 3 1 1.00 1 1
...............................................................................................TCACATTGCCAGGGATTTCCAAA....................................................... 23 1 1 1.00 1 1
..............................................................................................ATCACAATGGCAGGGATTTCCA......................................................... 22 2 1 1.00 1 1
..............................................................................................CTAACATTGCCAGGGATTTCCA......................................................... 22 2 1 1.00 1 1
..............................................................................................ATCACAGTGCCAGGGATTTCCAA........................................................ 23 1 1 1.00 1 1
..............................................................................................ATCACATTGCCAGGGATTTACA......................................................... 22 1 1 1.00 1 1
..............................................................................................ATCACATTGCCAGGGATTTCCAAAT...................................................... 25 2 1 1.00 1 1
..............................................................................................ATCACATTGCCGGGGATTT............................................................ 19 1 1 1.00 1 1
..............................................................................................ATCACATTGCCAGGGATTTGCAA........................................................ 23 1 1 1.00 1 1
..............................................................................................ATCACATTGGCAGGGATTTCC.......................................................... 21 1 1 1.00 1 1
...............................................................................................TCACATTGCCAGGGATTTCCAAC....................................................... 23 0 1 1.00 1 1
..............................................................................................ATCACAGTGACAGGGATTTCCA......................................................... 22 2 1 1.00 1 1
..............................................................................................ATCACAGTGCCAGGGATTTCC.......................................................... 21 1 1 1.00 1 1
..............................................................................................ATCACATTGCAAGGGATTTCCA......................................................... 22 1 1 1.00 1 1
..............................................................................................ATCACATTGCCAGAGATTTCCAAAA...................................................... 25 3 1 1.00 1 1
.................................................................................................ACATTGCCAGGGATTTCCA......................................................... 19 0 1 1.00 1 1
..............................................................................................CTCACATTGCCAGGGATTTCCAATT...................................................... 25 3 1 1.00 1 1
..............................................................................................ATCACATTGCCCGGGATTTCCA......................................................... 22 1 1 1.00 1 1
..............................................................................................ATCACATTGCCAGGGATTTTCAT........................................................ 23 2 1 1.00 1 1
..............................................................................................ATCACATTGCCAGGGATTTGCA......................................................... 22 1 1 1.00 1 1
..................................................................................................CATTGCCAGGGATTTCC.......................................................... 17 0 1 1.00 1 1
..............................................................................................ATCAAATTGCCAGGGATTTCCA......................................................... 22 1 1 1.00 1 1
..............................................................................................ATCACATTGCCAGGGAGTTCCT......................................................... 22 2 2 1.00 2 2
..............................................................................................GTCACATTGCCAGGGATTTCCAAT....................................................... 24 2 1 1.00 1 1
..............................................................................................ATCACATTGCCAGGGATTTCCTT........................................................ 23 2 1 1.00 1 1
..............................................................................................CTCACATCGCCAGGGATTTCCA......................................................... 22 2 1 1.00 1 1
..............................................................................................ATCACATTGCCAGGGATTTCCTG........................................................ 23 2 1 1.00 1 1
.............................................................................................CATCACATTGCCAGGGATTTCC.......................................................... 22 1 1 1.00 1 1
..............................................................................................ATCACATTGCCAAGGATTTC........................................................... 20 1 1 1.00 1 1
..............................................................................................ATCACATTGCTAGGGATTTCC.......................................................... 21 1 1 1.00 1 1
..............................................................................................ATCATATTGCCAGGGATTTCC.......................................................... 21 1 1 1.00 1 1
..............................................................................................ATCACATTGCGAGGGATTTCC.......................................................... 21 1 1 1.00 1 1
..............................................................................................ATCACATTGCCAGGGATTTCCACT....................................................... 24 2 2 0.50 1 1
..............................................................................................CTCACATTGCCAAGGATTTCCA......................................................... 22 2 2 0.50 1 1
..............................................................................................ATCACATTGCCAGGGATTTCTT......................................................... 22 2 2 0.50 1 1
...............................................................................................TCACATTGTCAGGGATTTCC.......................................................... 20 1 2 0.50 1 1
..............................................................................................ATCACATTGTCGGGGATTTCC.......................................................... 21 2 2 0.50 1 1
...............................................................................................TCACATTGCCAGGGATTACCAA........................................................ 22 1 2 0.50 1 1
..............................................................................................ATCACATTGCCAGAGATTT............................................................ 19 1 2 0.50 1 1
..............................................................................................ATCACATTGCCAAGGATTTAC.......................................................... 21 2 2 0.50 1 1
..............................................................................................ATCACATTGCCAGGGACTTC........................................................... 20 1 2 0.50 1 1
..............................................................................................ATCACATTGCCAGGGATTTCAT......................................................... 22 2 2 0.50 1 1
..............................................................................................CTCACATTGCCAGGGATTT............................................................ 19 1 5 0.40 2 2
..............................................................................................ATCACATTGCCAGGGATTTG........................................................... 20 1 3 0.33 1 1
..............................................................................................CTCACATTGCCAGGGATTTC........................................................... 20 1 3 0.33 1 1
..............................................................................................ATCACATTGGCAGGGATTTAC.......................................................... 21 2 7 0.29 2 2
..............................................................................................ATCACACTGACAGGGATTTCC.......................................................... 21 2 4 0.25 1 1
..............................................................................................ATCACATTGCCAGGGATG............................................................. 18 1 4 0.25 1 1
..............................................................................................ATCACATTGCCAGGGATTTTCT......................................................... 22 2 4 0.25 1 1
..............................................................................................ATCACATTGCCAGGGATTTAG.......................................................... 21 2 5 0.20 1 1
..............................................................................................ATCACATTGCCATGGATTTCT.......................................................... 21 2 6 0.17 1 1
..............................................................................................ATCACATTGCCAGGGATTTCCTTT....................................................... 24 3 6 0.17 1 1
.................................................................................................ACATTGCCAGGGATTACCAAA....................................................... 21 2 6 0.17 1 1
..............................................................................................ATCACATTGCCAGGGATTGA........................................................... 20 2 13 0.15 2 2
..............................................................................................ATCACATTGCCAGGGATTTAT.......................................................... 21 2 7 0.14 1 1
..............................................................................................CTCACATTGTCAGGGATTTCC.......................................................... 21 2 8 0.13 1 1
..............................................................................................ATCACATTGCCAGGGAATTCA.......................................................... 21 2 11 0.09 1 1
..............................................................................................CTCACATTGCCAGGGATTTT........................................................... 20 2 13 0.08 1 1
..............................................................................................CTCACATTGCCACGGATTTCCT......................................................... 22 3 15 0.07 1 1
..............................................................................................ATCACATTGCCAGGGAA.............................................................. 17 1 20 0.05 1 1
................................................................................................ACCATTGCCAGGGATTTCC.......................................................... 19 2 20 0.05 1 1

Anti-sense strand reads

GGGGTCCACGGTCGGCGACCGGGGTGGGTCACGGGGGTGGGGAGACGGTGCCGGCCGACCCCAAGGACCCCTACCCTAAACGACGAACAGTGTTTAGTGTAACGGTCCCTAAAGGTTGGCTGGGACACGGGACGGAGACCCCGGgGGgGGTGGTGGTGGTGGTtGTGGTGGTG

***********************************..........((((.((.(((.((((((((((((.((((.((((((.((.....)))))))).)))).))))))).))))).))).)).)).)).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:06 PM