ID:

eca-mir-218-2

 Coordinate:

chr14:12167930-12167992 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.5
mature

  1. eca-mir-218-1  chr3:103550531-103550551 -
  2. eca-mir-218-2  chr14:12167930-12167950 +
star

Sense Strand Reads

TGACGCTGCTTCCTGACCTTGACTCTGACCGGTCGCCGTGGGGCTTTCCTTTGTGCTTGATCTAACCATGTGGTGGCACGATGGAAACGGAACATGGTTCTGTCAAGCACCGCGGAAAGCACCGCGCTCTCCTGCAGCATGGCCCGCCACCGCCGCCACCACC

***********************************.(((((.(((((((...(((((((((..((((((((..((............))..))))))))..)))))))))...))))))).)))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................TTGTGCTTGATCTAACCATGT............................................................................................ 21 0 2 17.00 34 34
..................................................TTGTGCTTGATCTAACCATG............................................................................................. 20 0 2 5.50 11 11
..................................................TTGTGCTTGATCTAACCATGTG........................................................................................... 22 0 2 3.50 7 7
..................................................TTGTGCTTGATCTAACCATGTGT.......................................................................................... 23 1 2 3.50 7 7
..................................................TTGTGCTTGATCTAACCATGTGG.......................................................................................... 23 0 2 2.00 4 4
..................................................TTGTGCTTGATCTAACCATGTGGT......................................................................................... 24 0 2 1.50 3 3
..................................................TTGTGCTTGATCTAACCATGTGAT......................................................................................... 24 1 2 1.50 3 3
..................................................TTGTGCTTGATCTAACCATGTA........................................................................................... 22 1 2 1.00 2 2
..................................................TTGAGCTTGATCTAACCATGTGG.......................................................................................... 23 1 2 0.50 1 1
..................................................TTGTGCTTGATCTAACCATGTAA.......................................................................................... 23 2 2 0.50 1 1
..................................................TTGTGCTTGATCTAACTATGT............................................................................................ 21 1 2 0.50 1 1
..................................................TTGTGCTTGATCTAACCATGTGTT......................................................................................... 24 1 2 0.50 1 1
..................................................TTGTGCTTGATCTAACCATGTGA.......................................................................................... 23 1 2 0.50 1 1
..................................................TTGTGCTTGATCTAACCATGTAGT......................................................................................... 24 1 2 0.50 1 1
..................................................TTGTGCTTGATCTAACCATGTAG.......................................................................................... 23 1 2 0.50 1 1
..................................................TTGTGCTTGATCTAACCATGA............................................................................................ 21 1 2 0.50 1 1
..................................................TTGTGCTTGATCTAACCATGTGGTAT....................................................................................... 26 2 2 0.50 1 1
..................................................TTGTGCTTGATCTAACCATGTAGA......................................................................................... 24 2 2 0.50 1 1
..................................................TTGTGCTTGATCTAGCGATGTGA.......................................................................................... 23 3 4 0.25 1 1
..................................................TTGTGCTTGATCTAACCATGTAAA......................................................................................... 24 3 4 0.25 1 1

Anti-sense strand reads

ACTGCGACGAAGGACTGGAACTGAGACTGGCCAGCGGCACCCCGAAAGGAAACACGAACTAGATTGGTACACCACCGTGCTACCTTTGCCTTGTACCAAGACAGTTCGTGGCGCCTTTCGTGGCGCGAGAGGACGTCGTACCGGGCGGTGGCGGCGGTGGTGG

***********************************.(((((.(((((((...(((((((((..((((((((..((............))..))))))))..)))))))))...))))))).)))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:41 AM