ID:

eca-mir-218-1

 Coordinate:

chr3:103550490-103550551 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature

  1. eca-mir-218-1  chr3:103550531-103550551 -
  2. eca-mir-218-2  chr14:12167930-12167950 +
star

Sense Strand Reads

TTACCCTTGGCCTAGTGGATGGTGTAGTGATTATGTGGCGAGATTTTCTGTTGTGCTTGATCTAACCATGTGGTTGCCAGGTATGAGTAAAACATGGTTCCGTCAAGCACCATGGAACGTCACGCAGCTTTCTACAGCATGACAAGCTGCTGAGGCTTAAAT

***********************************..(((.(((.((((((.(((((((((..((((((((..((((((....)).)))).))))))))..))))))))).)))))).))).)))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................TTGTGCTTGATCTAACCATGT........................................................................................... 21 0 2 17.00 34 34
..................................................TTGTGCTTGATCTAACCATG............................................................................................ 20 0 2 5.50 11 11
..................................................TTGTGCTTGATCTAACCATGTG.......................................................................................... 22 0 2 3.50 7 7
..................................................TTGTGCTTGATCTAACCATGTGT......................................................................................... 23 1 2 3.50 7 7
..................................................TTGTGCTTGATCTAACCATGTGG......................................................................................... 23 0 2 2.00 4 4
..................................................TTGTGCTTGATCTAACCATGTGGT........................................................................................ 24 0 2 1.50 3 3
..................................................TTGTGCTTGATCTAACCATGTGAT........................................................................................ 24 1 2 1.50 3 3
..................................................TTGTGCTTGATCTAACCATGTGAAT....................................................................................... 25 2 1 1.00 1 1
..................................................TTGTGCTTGATCTAACCATGTA.......................................................................................... 22 1 2 1.00 2 2
..................................................TTGTGCTTGATCTAACCATGA........................................................................................... 21 1 2 0.50 1 1
..................................................TTGTGCTTGATCTAACCATGTGGTAT...................................................................................... 26 2 2 0.50 1 1
..................................................TTGTGCTTGATCTAACCATGTGA......................................................................................... 23 1 2 0.50 1 1
..................................................TTGTGCTTGATCTAACCATGTAG......................................................................................... 23 1 2 0.50 1 1
..................................................TTGTGCTTGATCTAACCATGTGTT........................................................................................ 24 1 2 0.50 1 1
..................................................TTGTGCTTGATCTAACCATGTAGT........................................................................................ 24 1 2 0.50 1 1
..................................................TTGAGCTTGATCTAACCATGTGG......................................................................................... 23 1 2 0.50 1 1
..................................................TTGTGCTTGATCTAACCATGTAA......................................................................................... 23 2 2 0.50 1 1
..................................................TTGTGCTTGATCTAACCATGTAGA........................................................................................ 24 2 2 0.50 1 1
..................................................TTGTGCTTGATCTAACTATGT........................................................................................... 21 1 2 0.50 1 1
..................................................TTGTGCTTGATCTAGCGATGTGA......................................................................................... 23 3 4 0.25 1 1
..................................................TTGTGCTTGATCTAACCATGTAAA........................................................................................ 24 3 4 0.25 1 1

Anti-sense strand reads

AATGGGAACCGGATCACCTACCACATCACTAATACACCGCTCTAAAAGACAACACGAACTAGATTGGTACACCAACGGTCCATACTCATTTTGTACCAAGGCAGTTCGTGGTACCTTGCAGTGCGTCGAAAGATGTCGTACTGTTCGACGACTCCGAATTTA

***********************************..(((.(((.((((((.(((((((((..((((((((..((((((....)).)))).))))))))..))))))))).)))))).))).)))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:00 PM