ID:

eca-mir-20a

 Coordinate:

chr17:61792863-61792933 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.9 -38.9 -38.9

Sense Strand Reads

TATTGTGTCGATGTAGAATCTGCCTGGTGTATCTGATGGTGACAGCTTCTGTAGCACTAAAGTGCTTATAGTGCAGGTAGTGTTTAGTTATCTACTGCATTATGAGCACTTAAAGTACTGCTAGCTGTAGAACTCCAGCCTCGGCCTGTCGCCCAGTCAAACTGTCCAGTT

******************************************(((((...((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).)))).)))))....**************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.........................................................TAAAGTGCTTATAGTGCAGGTAGT.......................................................................................... 24 0 1 213.00 213 213
.........................................................TAAAGTGCTTATAGTGCAGGTAG........................................................................................... 23 0 1 154.00 154 154
.........................................................TAAAGTGCTTATAGTGCAGGTAGA.......................................................................................... 24 1 1 45.00 45 45
.........................................................TAAAGTGCTTATAGTGCAGGTA............................................................................................ 22 0 1 26.00 26 26
.........................................................TAAAGTGCTTATAGTGCAGGTAT........................................................................................... 23 1 1 24.00 24 24
.........................................................TAAAGTGCTTATAGTGCAGGT............................................................................................. 21 0 1 9.00 9 9
.........................................................TAAAGTGCTTATAGTGCAGG.............................................................................................. 20 0 1 9.00 9 9
.........................................................TAAAGTGCTTATAGTGCAGGTAGTA......................................................................................... 25 1 1 8.00 8 8
.........................................................TAAAGTGCTTATAGTGCAGGTAA........................................................................................... 23 1 1 8.00 8 8
.........................................................TAAAGTGCTTATAGTGCAGGTATT.......................................................................................... 24 1 1 7.00 7 7
.........................................................TAAAGTGCTTATAGTGCAGGTAGAAAT....................................................................................... 27 3 1 5.00 5 5
.........................................................TAAAGTGCTTATAGTGCAGGTAAG.......................................................................................... 24 2 1 4.00 4 4
.........................................................TAAAGTGCTTATAGTGCAGGTATA.......................................................................................... 24 2 1 3.00 3 3
.........................................................TAAAGTGCTTATAGTGCAGGTAGTT......................................................................................... 25 1 1 3.00 3 3
.........................................................TAAAGTGCTTATAGTGCAGGTAGTAT........................................................................................ 26 1 1 3.00 3 3
.........................................................TAAAGTGCTTATAGTGCAGGTAGGAT........................................................................................ 26 2 1 3.00 3 3
.............................................................................................ACTGCATTATGAGCACTTAAAGT....................................................... 23 0 1 3.00 3 3
.........................................................TAAAGTGCTTATAGTGCAGGTAGTATTT...................................................................................... 28 1 1 2.00 2 2
.........................................................TAAAGTGCTTATAGTGCAGGTAGAGT........................................................................................ 26 1 1 2.00 2 2
.........................................................TAAAGTGCTTATAGTGCAGGTGA........................................................................................... 23 2 1 2.00 2 2
.........................................................TAAAGTGCTTATAGTGCAGGTAGAA......................................................................................... 25 2 1 2.00 2 2
.........................................................TAAAGTGCTTATAGTGAAGGTAGT.......................................................................................... 24 1 1 2.00 2 2
.............................................................................................ACTGCATTATGAGCACTTAAAG........................................................ 22 0 1 2.00 2 2
.........................................................TAAAGTGCTTATAGTGCAGGTAGTTT........................................................................................ 26 1 1 2.00 2 2
.........................................................TAAAGTGCTTATAGTGCAGGTAGAT......................................................................................... 25 2 1 2.00 2 2
.........................................................TAAAGTGCTTATGGTGCAGGTAGT.......................................................................................... 24 1 1 2.00 2 2
.........................................................TAAAGTGCTTATAGTGCAGGTAGTATT....................................................................................... 27 1 1 2.00 2 2
.........................................................TAAAGTGCTTATAGTGCAGGTATTT......................................................................................... 25 2 1 2.00 2 2
.........................................................TAAAGTGCTTATAGTGCAGGTAGATATT...................................................................................... 28 3 1 2.00 2 2
.........................................................TAAAGTGCTTATAGTGCAGGTAGG.......................................................................................... 24 1 1 2.00 2 2
.........................................................TAAAGTGCTTATAGTGCAGGTAGGA......................................................................................... 25 2 1 2.00 2 2
.........................................................TAAAGTGCTTATAGTGCAGGTAGAAT........................................................................................ 26 2 1 2.00 2 2
.........................................................TAAAGTGCTTATAGTGCAGGTAGAAATT...................................................................................... 28 3 1 2.00 2 2
.........................................................CAAAGTGCTCATAGTGCAGGTAGAGTTT...................................................................................... 28 3 2 1.50 3 3
.........................................................TAAAGTGCTTATAGTGCAGGTAGTGT........................................................................................ 26 0 1 1.00 1 1
...........................................................AAGTGCTTATAGTGCAGGTAGT.......................................................................................... 22 0 1 1.00 1 1
....................................................................................................................ACTGCTAGCTGTAGAACTCCA.................................. 21 0 1 1.00 1 1
............................................................................................................................CTGTAGAACTCCAGCCTCGGCCTGTCGCCCAGTC............. 34 0 1 1.00 1 1
.........................................................TAAAGTCCTTATAGTGCAGGTAGA.......................................................................................... 24 2 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGCTAG........................................................................................... 23 1 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGAG......................................................................................... 25 1 1 1.00 1 1
.............................................................................................ACTGCATTATGGGCACTTAAAGT....................................................... 23 1 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGATAG........................................................................................... 23 1 1 1.00 1 1
.........................................................TAAAGTGCTTATGGTGCAGGTAT........................................................................................... 23 2 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGTAGGTAG........................................................................................... 23 1 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTAC........................................................................................... 23 1 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGAAG........................................................................................... 23 1 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGAATT....................................................................................... 27 2 1 1.00 1 1
................................................................................TGTTTAGTTATCTACTGCATTATGAGCACTTAAAGT....................................................... 36 0 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGTAA........................................................................................ 26 2 1 1.00 1 1
.............................................................................................ACTGCATTATGAGCACGTAAAGT....................................................... 23 1 1 1.00 1 1
.........................................................TAAAGTGCTTAGAGTGCAGGTAG........................................................................................... 23 1 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGAACT....................................................................................... 27 3 1 1.00 1 1
................................ATTATGGTGACAGCTTCTGTAGCAC.................................................................................................................. 25 2 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGC.......................................................................................... 24 1 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGGAGGTAG........................................................................................... 23 1 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTGG........................................................................................... 23 1 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGAAGT....................................................................................... 27 3 1 1.00 1 1
....................................TGGTGACAGCTTCTGTAGCAC.................................................................................................................. 21 0 1 1.00 1 1
.........................................................TAAAGTGATTATAGTGCAGGTGG........................................................................................... 23 2 1 1.00 1 1
................................................................................TGTTTAGTTATCTACTGCATTATGAGCACT............................................................. 30 0 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTAAAA......................................................................................... 25 3 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGAC......................................................................................... 25 2 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGAAGGTAG........................................................................................... 23 1 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTTTTAT........................................................................................ 26 3 1 1.00 1 1
..........................................................AAAGTGATTATAGTGCAGGCAGT.......................................................................................... 23 2 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTGGTATTT...................................................................................... 28 2 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTAAA.......................................................................................... 24 2 1 1.00 1 1
.........................................................TAGAGTGCTTATAGTGCAGGTAG........................................................................................... 23 1 1 1.00 1 1
.........................................................TAAAGTGCTTATGGTGCAGGTAG........................................................................................... 23 1 1 1.00 1 1
.............................................................................................ACTGCATTATGAGCACTTAAACT....................................................... 23 1 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTGGT.......................................................................................... 24 1 1 1.00 1 1
.........................................................TAAAGTGCTTAGAGTGCAGGTAGT.......................................................................................... 24 1 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGTATATT..................................................................................... 29 3 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTAAAC......................................................................................... 25 3 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTTT........................................................................................... 23 2 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGAAA........................................................................................ 26 3 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGATAGT.......................................................................................... 24 1 1 1.00 1 1
..................................GATGGTGACAGCTTCTGTAGCAC.................................................................................................................. 23 0 1 1.00 1 1
...................................ATGGTGACAGCTTCTGTAGCAC.................................................................................................................. 22 0 1 1.00 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGAGAA....................................................................................... 27 3 2 0.50 1 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGGAAT....................................................................................... 27 3 2 0.50 1 1
.........................................................CAAAGTGCTCATAGTGCAGGTAGTGTTT...................................................................................... 28 2 2 0.50 1 1
.........................................................TAAAGTGCTTATAGTGCAGGAT............................................................................................ 22 2 2 0.50 1 1
.........................................................CAAAGTGCTTACAGTGCAGGTAGTATTT...................................................................................... 28 3 3 0.33 1 1

Anti-sense strand reads

ATAACACAGCTACATCTTAGACGGACCACATAGACTACCACTGTCGAAGACATCGTGATTTCACGAATATCACGTCCATCACAAATCAATAGATGACGTAATACTCGTGAATTTCATGACGATCGACATCTTGAGGTCGGAGCCGGACAGCGGGTCAGTTTGACAGGTCAA

****************************************(((((...((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).)))).)))))....****************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:45 AM