ID:

eca-mir-204b-2

 Coordinate:

chr23:20137064-20137131 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.4

Sense Strand Reads

GGAGCTCCTGATCGTGTCCCTGTGGCTACAGTCTTTCTTCATGTGACTCGTGGACTTCCCTTTGTCATCCTATGCCTGAGAATATATGAAGGAGGCTGGGAAGGCAAAGGGACGTTCAATTGTCATCACTGGCATCTTTTTTGATCATTGCACCATCATCAAATATGT

****************************************..(((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...))))).....************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.......................................................TTCCCTTTGTCATCCTATGCCT........................................................................................... 22 0 1 4060.00 4060 4060
.......................................................TTCCCTTTGTCATCCTATGCCTG.......................................................................................... 23 0 1 780.00 780 780
.......................................................TTCCCTTTGTCATCCTATGCCTGT......................................................................................... 24 1 1 196.00 196 196
.......................................................TTCCCTTTGTCATCCTATGCCTGA......................................................................................... 24 0 1 129.00 129 129
.......................................................TTCCCTTTGTCATCCTATGCC............................................................................................ 21 0 1 50.00 50 50
.......................................................TTCCCTTTGTCATCCTATGCCA........................................................................................... 22 1 1 41.00 41 41
.......................................................TTCCCTTTGTCATCCTATGCCTGTA........................................................................................ 25 2 1 36.00 36 36
.......................................................TTCCCTTTGTCGTCCTATGCCT........................................................................................... 22 1 1 35.00 35 35
.......................................................TTCCCTTTGTCATCCTATGCCG........................................................................................... 22 1 1 35.00 35 35
.......................................................TTCCCTTTGTCATCCTATGGCT........................................................................................... 22 1 1 26.00 26 26
.......................................................TTCCCTTTGTCAGCCTATGCCT........................................................................................... 22 1 1 25.00 25 25
.......................................................TTCCCTTTGTCATCCTATGCCTT.......................................................................................... 23 1 1 20.00 20 20
.......................................................TTCCCTTTGTCATCCTATGCCTGTT........................................................................................ 25 2 1 18.00 18 18
.......................................................TTCCCTTTGTCATCCTATGACT........................................................................................... 22 1 1 18.00 18 18
.......................................................TTCCCTTTGTCATCCTATGCCTAA......................................................................................... 24 1 1 18.00 18 18
.......................................................TTCCCTTTGTCATCCTATGCCTA.......................................................................................... 23 1 2 17.50 35 35
.......................................................TTCCCTTTGTCATCCTATGCCTGTAA....................................................................................... 26 2 1 12.00 12 12
.......................................................TTCCCTTTGTCATCCTGTGCCT........................................................................................... 22 1 2 12.00 24 24
.......................................................TTCCCTTTGTCATCCTATGCCTGAA........................................................................................ 25 1 1 12.00 12 12
.......................................................TTCCCTTTGTCATCCTATGCCC........................................................................................... 22 1 1 10.00 10 10
.......................................................TTCCCTTTGTCATCCTATGCCTTT......................................................................................... 24 2 1 10.00 10 10
.......................................................TTCCCTTTGTCAACCTATGCCT........................................................................................... 22 1 1 9.00 9 9
.......................................................TTCCCTTTGTCATCCTATGCCTAT......................................................................................... 24 2 2 8.50 17 17
.......................................................TTCCCTTTGTCATCCTATGTCT........................................................................................... 22 1 1 8.00 8 8
.......................................................TTCCCTTTGGCATCCTATGCCT........................................................................................... 22 1 1 8.00 8 8
.......................................................TTCCCTTTGTCGTCCTATGCCTG.......................................................................................... 23 1 1 8.00 8 8
.......................................................TTCCCTTTGTCATCCTATGACTG.......................................................................................... 23 1 1 7.00 7 7
.......................................................TTCCCTTTGTCATCCTATGCCTGTAGA...................................................................................... 27 3 1 7.00 7 7
.......................................................TTCCCTTTGTCATCCTATGCCGG.......................................................................................... 23 1 1 7.00 7 7
.......................................................TTCCCTTTGTCATCCTATGCCTAAT........................................................................................ 25 2 1 6.00 6 6
.......................................................TTCCCTTTGTCATCCTATGCCTAAA........................................................................................ 25 2 1 6.00 6 6
.......................................................TTCCCTTTGTCATCCTATGCCTGTAG....................................................................................... 26 3 1 5.00 5 5
.......................................................TTCCCTTTGTCATCGTATGCCT........................................................................................... 22 1 1 5.00 5 5
........................................................TCCCTTTGTCATCCTATGCCT........................................................................................... 21 0 1 5.00 5 5
.......................................................TTCCCTTTGTCATCCTATGCCTTA......................................................................................... 24 1 1 5.00 5 5
.......................................................TTCCCTTTGTCATCCTATGCCTGAGA....................................................................................... 26 0 1 5.00 5 5
.......................................................TTCCCTTTGTCACCCTATGCCT........................................................................................... 22 1 1 5.00 5 5
.......................................................TTCCCTTTGTCATCCTATGCCTGAT........................................................................................ 25 1 1 5.00 5 5
.......................................................TTCCCTTTGTCATCCTATGCCTGAAC....................................................................................... 26 2 1 5.00 5 5
.......................................................TTCCCTTTGTCATCCTATGCCTGG......................................................................................... 24 1 1 5.00 5 5
.......................................................TTCCCTTTGTCATCCTATGCCTGAAA....................................................................................... 26 1 1 5.00 5 5
.......................................................TTCCCTTTGTGATCCTATGCCT........................................................................................... 22 1 1 5.00 5 5
.......................................................TTCCCTTTGTCATCCTATGCCTGAAG....................................................................................... 26 2 1 4.00 4 4
.......................................................TTCCCTATGGCATCCTATGCCT........................................................................................... 22 2 1 4.00 4 4
.......................................................TTCCCTTTGTAATCCTATGCCT........................................................................................... 22 1 1 4.00 4 4
.......................................................TTCCCTTTGTCAGCCTATGCCTG.......................................................................................... 23 1 1 4.00 4 4
.......................................................TTCCCTTTGTCATCCTATGCCTGTAAT...................................................................................... 27 3 1 4.00 4 4
.......................................................TTCCCTTTGGCATCCTATGGCT........................................................................................... 22 2 1 4.00 4 4
.......................................................TTCCCTTTGTCATCCTTTGCCTTA......................................................................................... 24 2 2 3.50 7 7
.......................................................TTCCCTTTGTCATCCTATGCCTGTAT....................................................................................... 26 3 1 3.00 3 3
.......................................................TTCCCTTTGTCATCCTATGCCGGT......................................................................................... 24 2 1 3.00 3 3
.......................................................TTCCCTTTGTCATCCTATG.............................................................................................. 19 0 1 3.00 3 3
......................................................CTTCCCTTTGTCATCCTATGCCT........................................................................................... 23 0 1 3.00 3 3
.......................................................TTCCCTTTGTCATCCTATGGCTG.......................................................................................... 23 1 1 3.00 3 3
.......................................................TTCCCTTTGTCATCCTTTGCCTG.......................................................................................... 23 1 2 3.00 6 6
.......................................................TTCCCTTTGTCATCCTATGCCTGTTA....................................................................................... 26 2 1 3.00 3 3
.......................................................TTCCCTTTGTCATCCTATGACTGA......................................................................................... 24 1 1 3.00 3 3
........................................................TCCCTTTGTCATCCTATGCCTGA......................................................................................... 23 0 1 2.00 2 2
.......................................................TTCCCTTTGTCATCCTATGGC............................................................................................ 21 1 1 2.00 2 2
.......................................................TTCCCTTTGTCATCGTATGCCTG.......................................................................................... 23 1 1 2.00 2 2
.......................................................TTCCCTTTGTCATCCTATGCCTACAAAT..................................................................................... 28 3 1 2.00 2 2
.......................................................TTCCCTTTGTCATCCTATGCCTGTAAG...................................................................................... 27 3 1 2.00 2 2
.......................................................TTCCCTTTGTCATCCTATGCCTATAA....................................................................................... 26 3 1 2.00 2 2
.......................................................TTCCCTTTGTCATCCTATGCCTGTAAGT..................................................................................... 28 3 1 2.00 2 2
.......................................................TTCCCTTTGTCATCCTGTGCCTG.......................................................................................... 23 1 1 2.00 2 2
.......................................................TTCCCTTTGTCATCCTATGCCGGA......................................................................................... 24 1 1 2.00 2 2
.......................................................TTCCCTGTGCCATCCTATGCCT........................................................................................... 22 2 1 2.00 2 2
.......................................................TTCCCTTTGTCATCCTATGGCTGA......................................................................................... 24 1 1 2.00 2 2
.......................................................TTCCCCTTGTCATCCTATGCCTGA......................................................................................... 24 1 1 2.00 2 2
.......................................................TTCCCTTTGTCATCATATGCCT........................................................................................... 22 1 1 2.00 2 2
.......................................................TTCCCTATGTCATCCTATGCCT........................................................................................... 22 1 1 2.00 2 2
.......................................................TTCCCTTTGTCCTCCTATGCCT........................................................................................... 22 1 1 2.00 2 2
.......................................................TTCCCTTTGTCATCCTATGCCTGTAAA...................................................................................... 27 2 1 2.00 2 2
.......................................................TTCACTTTGTCATCCTATGCCT........................................................................................... 22 1 1 2.00 2 2
.......................................................TTCCCTGTGTCATCCTATGCCTG.......................................................................................... 23 1 1 2.00 2 2
.......................................................TTCCCTTTGTCATCCTATGCCTGTTT....................................................................................... 26 3 1 2.00 2 2
.......................................................TTCCCTTTGTCATCCTATGGCTGT......................................................................................... 24 2 1 2.00 2 2
.......................................................TTCCCTTTGTCTTCCTATGCCT........................................................................................... 22 1 1 2.00 2 2
.......................................................TTCCCTCTGTCATCCTATGCCT........................................................................................... 22 1 1 2.00 2 2
.......................................................TGCCCTTTGTCATCCTATGCCT........................................................................................... 22 1 1 2.00 2 2
.......................................................TTCCCTCTGGCATCCTATGCCT........................................................................................... 22 2 2 1.50 3 3
.......................................................TTCCCTGTGGCATCCTATGCCT........................................................................................... 22 2 4 1.25 5 5
.......................................................TTCCCTTTGTCATCCTCTGCCTG.......................................................................................... 23 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTGTAC....................................................................................... 26 3 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTGTTAAT..................................................................................... 28 2 1 1.00 1 1
.......................................................TTCCCCTTGTCATCCTATGCCTGT......................................................................................... 24 2 1 1.00 1 1
..............................................................................................GCTGGGAAGGCAAAGGGACGTT.................................................... 22 0 1 1.00 1 1
.......................................................TTCCCTTTGCCATCCTATGCCTGT......................................................................................... 24 2 1 1.00 1 1
.......................................................TTGCCTTTGTCATCCTATGCCT........................................................................................... 22 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATTCTATGCCT........................................................................................... 22 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTTTGCCTTAGA....................................................................................... 26 2 1 1.00 1 1
.......................................................TTCCCTTTGTCATCGTATGCCTGA......................................................................................... 24 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCCG.......................................................................................... 23 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTGTAAAGA.................................................................................... 29 3 1 1.00 1 1
.......................................................TTCCCTCTGACATCCTATGCCT........................................................................................... 22 2 2 1.00 2 2
.......................................................TTCCCTTTGTCACCCTATGCCTG.......................................................................................... 23 1 1 1.00 1 1
........................................................TCCCTTTGTCATCCTATGCCTGT......................................................................................... 23 1 1 1.00 1 1
.......................................................TTCCCTTTGACATCCTATGCCT........................................................................................... 22 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCAT.......................................................................................... 23 2 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTTG......................................................................................... 24 2 2 1.00 2 2
.......................................................TTCCCTTTGTCATCCTATGAC............................................................................................ 21 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCATATGCCTG.......................................................................................... 23 1 1 1.00 1 1
.......................................................TTCCCTTTGTCACCCTATGCCCG.......................................................................................... 23 2 1 1.00 1 1
.......................................................TTCCCCTTGTCATCCTATGCCT........................................................................................... 22 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGACTGAAA....................................................................................... 26 2 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCGGTT........................................................................................ 25 3 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTGATATT..................................................................................... 28 2 1 1.00 1 1
.......................................................TTCCCTTTGTTATCCTATGCCTG.......................................................................................... 23 1 1 1.00 1 1
.......................................................TTCCCTTTGTCGTCCTATGCCTAAT........................................................................................ 25 3 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTATA........................................................................................ 25 3 2 1.00 2 2
.......................................................TTCCCTTTGTAATCCTATGCCTGTAA....................................................................................... 26 3 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTA................................................................................................ 17 0 1 1.00 1 1
.......................................................TTCCCTATGTCATCCTATGCCTG.......................................................................................... 23 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGGCTGTA........................................................................................ 25 3 1 1.00 1 1
.......................................................TTCGCTTTGTCATCCTATGCCT........................................................................................... 22 1 1 1.00 1 1
.......................................................TTCCCTTTGTCGTCCTATGCCTGTA........................................................................................ 25 3 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTGGA........................................................................................ 25 2 1 1.00 1 1
.......................................................TCCCCTTTGTCATCCTATGCCTGAAA....................................................................................... 26 2 1 1.00 1 1
.......................................................TTCCCTTTGACATCCTATGGCT........................................................................................... 22 2 2 1.00 2 2
.......................................................TTCACTTTGTCATCCTATGCCTG.......................................................................................... 23 1 1 1.00 1 1
.......................................................TTCCCTTTGGCATCCTATGCCTG.......................................................................................... 23 1 1 1.00 1 1
.......................................................TTTCCTTTGTCATCCTATGCCT........................................................................................... 22 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTGAAT....................................................................................... 26 2 1 1.00 1 1
.......................................................TTCCCTATGACATCCTATGCCTG.......................................................................................... 23 2 1 1.00 1 1
.......................................................TTCCCTTTGTCAGCCTATGCCTGT......................................................................................... 24 2 1 1.00 1 1
.......................................................TTCCCTTTGTCATCTTATGCCTG.......................................................................................... 23 1 1 1.00 1 1
.......................................................CTCCCTTTGTCATCCTATGCCT........................................................................................... 22 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTGAG........................................................................................ 25 0 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGC............................................................................................. 20 0 1 1.00 1 1
.......................................................GTCCCTTTGTCATCCTATGCCT........................................................................................... 22 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTTGGAATT.................................................................................... 29 3 1 1.00 1 1
.......................................................TTCTCTTTGTCATCCTATGCCT........................................................................................... 22 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTAAG........................................................................................ 25 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCGTATGCCTGTA........................................................................................ 25 3 1 1.00 1 1
.......................................................TTCCCTTTGCCATCCTATGCCT........................................................................................... 22 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGGCAG.......................................................................................... 23 2 1 1.00 1 1
.......................................................TTCCCTGTGGCATCCTATGCCTG.......................................................................................... 23 2 1 1.00 1 1
..............................................................................................GCTGGGAAGGCAAAGGGACG...................................................... 20 0 1 1.00 1 1
.......................................................GTCCCTTTGTCATCCTATGCCTG.......................................................................................... 23 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTGTTAT...................................................................................... 27 3 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTGGAA....................................................................................... 26 2 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTAAAA....................................................................................... 26 2 1 1.00 1 1
.......................................................TTCCCTTTGGCATCCTATGGCTGT......................................................................................... 24 3 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTGACT....................................................................................... 26 2 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTGAATA...................................................................................... 27 2 1 1.00 1 1
.......................................................TTCCCTTTGTCATCGTATGCCTGT......................................................................................... 24 2 1 1.00 1 1
.......................................................TTCCCTTTTTCATCCTATGCCT........................................................................................... 22 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCTTATGCCT........................................................................................... 22 1 1 1.00 1 1
..........................................................CCTTTGTCATCCTATGCC............................................................................................ 18 0 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCAG.......................................................................................... 23 1 1 1.00 1 1
.......................................................TACCCTTTGTCATCCTATGCCTG.......................................................................................... 23 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTTTGCCAGA......................................................................................... 24 2 1 1.00 1 1
.......................................................TTCCCTTTGTCAGCCTATGCCTGA......................................................................................... 24 1 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTGATT....................................................................................... 26 2 1 1.00 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTAAC........................................................................................ 25 2 1 1.00 1 1
........................................................TCCCCTTGTCATCCTATGCCT........................................................................................... 21 1 1 1.00 1 1
......................................................CTTCCCTTTGTCATCCTATGCCTG.......................................................................................... 24 0 1 1.00 1 1
.......................................................TTCCCTTTGCCATCCTATGGCT........................................................................................... 22 2 2 0.50 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTACA........................................................................................ 25 3 2 0.50 1 1
.......................................................TTCCCTTTGTCATCGTGTGCCT........................................................................................... 22 2 4 0.50 2 2
.......................................................TTCCCTTTGTCATCCTCTGCCTTAT........................................................................................ 25 3 2 0.50 1 1
.......................................................TTCCCTTTGTCATCCTCTGCCT........................................................................................... 22 1 2 0.50 1 1
........................................................TTCCTTTGTCATCCTATGCCT........................................................................................... 21 1 2 0.50 1 1
.......................................................TTCCCTTTGTCATCCTATGCCGTG......................................................................................... 24 3 2 0.50 1 1
.......................................................TTCCCTGTGTCATCCTATGCCTGT......................................................................................... 24 2 2 0.50 1 1
.......................................................TTCCCTTTGTCATCCTATGGCTA.......................................................................................... 23 2 2 0.50 1 1
.......................................................TTCCCTATGCCATCCTATGCCTGT......................................................................................... 24 3 2 0.50 1 1
.......................................................TTCCCTCTGGCATCCTATGCCTG.......................................................................................... 23 2 2 0.50 1 1
.......................................................TTCCCTTTGTCATCGTGTGCCTG.......................................................................................... 23 2 2 0.50 1 1
.......................................................TTCCCTTTGACATCCTATGACT........................................................................................... 22 2 9 0.44 4 4
.......................................................TTCCCTGTGACATCCTATGCCT........................................................................................... 22 2 3 0.33 1 1
.......................................................TCCTCTTTGTCATCCTATGCCT........................................................................................... 22 2 3 0.33 1 1
.......................................................TTCCCTTTGTCATCCTATGCCAAT......................................................................................... 24 3 3 0.33 1 1
.......................................................TTCCCTTTGGCATCCTATGGCG........................................................................................... 22 3 3 0.33 1 1
.......................................................TTCCCTTTGTCATCCTTTGCCAG.......................................................................................... 23 2 3 0.33 1 1
.......................................................TTCCCTTTGTCATCCTATGACTAAA........................................................................................ 25 3 3 0.33 1 1
.......................................................TTCCCTTTGTCATCCTTTGCCTAAAA....................................................................................... 26 3 3 0.33 1 1
.......................................................TTCCCTATGCCATCCTATGGCTG.......................................................................................... 23 3 3 0.33 1 1
.......................................................TTCCCTTTGTCATCCTATGGT............................................................................................ 21 2 4 0.25 1 1
.......................................................TTCCCTATGCCATCCTATGACTG.......................................................................................... 23 3 4 0.25 1 1
.......................................................TTCCCTTTGTCATCGTGTGCC............................................................................................ 21 2 4 0.25 1 1
.......................................................TTCCCTTTGTCATCATGTGCCT........................................................................................... 22 2 4 0.25 1 1
.......................................................TTCCCTTTGTCATCCTATGACTAT......................................................................................... 24 3 8 0.25 2 2
........................................................TTCCCTTGTCATCCTATGCCT........................................................................................... 21 2 5 0.20 1 1
.......................................................TTCCCTTTGGCATCCTATGACT........................................................................................... 22 2 5 0.20 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTATT........................................................................................ 25 3 6 0.17 1 1
.......................................................TTCCCTTTGTCATCCTATGCCTTTT........................................................................................ 25 3 6 0.17 1 1
.......................................................TTCCCTGTGGCATCCTATGGCTG.......................................................................................... 23 3 6 0.17 1 1
.......................................................TTCCCTTTGTCATCCTTTGCCATA......................................................................................... 24 3 9 0.11 1 1
.......................................................TTCCCTATGCCATCCTATGCCG........................................................................................... 22 3 12 0.08 1 1
.......................................................TTCCCTTTGTCATCCTAG............................................................................................... 18 1 14 0.07 1 1

Anti-sense strand reads

CCTCGAGGACTAGCACAGGGACACCGATGTCAGAAAGAAGTACACTGAGCACCTGAAGGGAAACAGTAGGATACGGACTCTTATATACTTCCTCCGACCCTTCCGTTTCCCTGCAAGTTAACAGTAGTGACCGTAGAAAAAACTAGTAACGTGGTAGTAGTTTATACA

*************************************..(((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...))))).....**************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:51 AM