ID:

eca-mir-200b

Coordinate:

chr2:48455071-48455139 -

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

CATCGAGTCCCTCCTGACCCAGCGGGCGGCCCCAGACCCACCTCGGGGCGGCCGTCGCCATCTTACTGGGCAGCATTGGATGTGTCTGGTCTCTAATACTGCCTGGTAATGATGACGGCGGGGCCCTGCACGCAGCCAGGGGGggGgggGggggtGgggGGgggggggg

***********************************........((((((..((((((.(((((((((((((((.((((((...........)))))).))))))))))).)))).)))))).))))))......***********************************
Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.............................................................................................TAATACTGCCTGGTAATGATGAC..................................................... 23 0 1 17.00 17 17
.............................................................................................TAATACTGCCTGGTAATGATGACT.................................................... 24 1 1 7.00 7 7
.............................................................................................TAATGCTGCCTGGTAATGATGAC..................................................... 23 1 1 5.00 5 5
.............................................................................................TAATGCTGCCTGGTAATGATGACT.................................................... 24 2 1 3.00 3 3
..............................................................................................AATACTGCCTGGTAATGATGACT.................................................... 23 1 1 2.00 2 2
.............................................................................................TAATACTGCCTGGTAATGATGACA.................................................... 24 1 1 1.00 1 1
.............................................................................................TAATACTGTCTGGTAATGATGAC..................................................... 23 1 1 1.00 1 1
..............................................................................................AATACTGCCTGGTAATGATGACA.................................................... 23 1 1 1.00 1 1
.............................................................................................TAATACTGCCTGGTAATGATGAA..................................................... 23 1 1 1.00 1 1
.............................................................................................TAATACTGCCTGGTAATGATGT...................................................... 22 1 1 1.00 1 1
.............................................................................................GAATACTGCCTGGTAATGATGAC..................................................... 23 1 1 1.00 1 1

Anti-sense strand reads

GTAGCTCAGGGAGGACTGGGTCGCCCGCCGGGGTCTGGGTGGAGCCCCGCCGGCAGCGGTAGAATGACCCGTCGTAACCTACACAGACCAGAGATTATGACGGACCATTACTACTGCCGCCCCGGGACGTGCGTCGGTCCCCCggCgggCggggtCgggCCgggggggg

***********************************........((((((..((((((.(((((((((((((((.((((((...........)))))).))))))))))).)))).)))))).))))))......***********************************
Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:48 AM