ID:

eca-mir-19b-2

 Coordinate:

chrX:106692173-106692268 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.6 -43.6 -43.3
mature

  1. eca-mir-19b  chr17:61793043-61793064 +
  2. eca-mir-19b-2  chrX:106692186-106692207 -
star

Sense Strand Reads

CCAGTACTCTTGGATAACGAATCTCCTATTGATGCAGAGAATATTCAAAGACACTGCTACTTACGATTAGTTTTGCAGGTTTGCATTTCAGCGTATATATGTATATATGGCTGTGCAAATCCATGCAAAACTGATTGTGATAATGTGTGCTGTCTACGGCTTTGTGACTCTCTTCACGCGTATCTCCGCCACGCAT

***********************************.............(((((..((((((((((((((((((((((((((((((...((((.((((((....)))))))))))))))).)).)))))))))))))))))....))).)))))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...............................................................................................................TGTGCAAATCCATGCAAAACTG............................................................... 22 0 2 453.00 906 906
...............................................................................................................TGTGCAAATCCATGCAAAACTGA.............................................................. 23 0 2 191.00 382 382
...............................................................................................................TGTGCAAATCCATGCAAAACTGT.............................................................. 23 1 2 146.00 292 292
...............................................................................................................TGTGCAAATCCATGCAAAACT................................................................ 21 0 2 27.00 54 54
...............................................................................................................TGTGCAAATCCATGCAAAAC................................................................. 20 0 2 25.50 51 51
...............................................................................................................TGTGCAAATCCATGCAAAACTGTT............................................................. 24 1 1 20.00 20 20
...............................................................................................................TGTGCAAATCCATGCAAAACTGAT............................................................. 24 0 1 7.00 7 7
...............................................................................................................TGTGCAAATCCATGCAAAACTGTA............................................................. 24 2 2 4.00 8 8
...............................................................................................................TGTGCAAATCCATGCAGAACTG............................................................... 22 1 2 4.00 8 8
...............................................................................................................TGTGCAAATCCATGCAAAAATG............................................................... 22 1 2 4.00 8 8
...............................................................................................................TGTGCAAATCCATGTAAAACT................................................................ 21 1 2 3.00 6 6
...............................................................................................................TGTGCAAATCCATGCAAAACTGAA............................................................. 24 1 2 3.00 6 6
...............................................................................................................TGTGCAAATCCATGTAAAACTG............................................................... 22 1 2 2.50 5 5
...............................................................................................................TGTGCAAATCCATGCAAAACTGG.............................................................. 23 1 2 2.00 4 4
...............................................................................................................TGTGCAAATGCATGCAAAACTG............................................................... 22 1 2 2.00 4 4
...............................................................................................................TGTGCAAATCCATGCAAAACGG............................................................... 22 1 2 2.00 4 4
...............................................................................................................TGTGCAAATCCAGGCAAAACTG............................................................... 22 1 2 2.00 4 4
...............................................................................................................TGTGCAAATCCATGCAAAACTGC.............................................................. 23 1 2 2.00 4 4
...............................................................................................................TGTGCAAATCCATGCAAAACTCA.............................................................. 23 1 2 1.50 3 3
...............................................................................................................TGTGCAAATCCATGGAAAACTG............................................................... 22 1 2 1.50 3 3
...............................................................................................................TGTGCAAATCCATTCAAAACTG............................................................... 22 1 3 1.33 4 4
...............................................................................................................TGTGCAAATCCATGCAAAAGTGA.............................................................. 23 1 3 1.33 4 4
...............................................................................................................TGTGCAAATACATGCAAAACTGA.............................................................. 23 1 2 1.00 2 2
...............................................................................................................TGTGCAAATCCATGCAAAAATGA.............................................................. 23 1 2 1.00 2 2
...............................................................................................................TGTGCAAATCCATTCAAAACTGA.............................................................. 23 1 3 1.00 3 3
...............................................................................................................TGTGCAAATCCATGCAAAACTTA.............................................................. 23 1 2 1.00 2 2
...............................................................................................................TGTGCAGATCCATGCAAAACTGAT............................................................. 24 1 1 1.00 1 1
...............................................................................................................TGTGCAAATCCACGCAAAACTG............................................................... 22 1 2 1.00 2 2
...............................................................................................................TGTGCAAATCCATGCAAAACTT............................................................... 22 1 2 1.00 2 2
...............................................................................................................TGTGCAAATCCATGCAAAACTA............................................................... 22 1 2 1.00 2 2
...............................................................................................................TGTGCAAATCCAGGCAAAACTGA.............................................................. 23 1 2 1.00 2 2
...............................................................................................................TGTGCAAATCCATGCAAAACTTT.............................................................. 23 2 2 1.00 2 2
...............................................................................................................TGTGCAAATCCATGCAAAACTGAAA............................................................ 25 2 2 1.00 2 2
...............................................................................................................TGTGCAAATCCATGCAAAAATGT.............................................................. 23 2 3 1.00 3 3
...............................................................................................................TGTGCAAATCCATGCAAAAGTG............................................................... 22 1 3 0.67 2 2
...............................................................................................................TGTGCAAATCCAGGCAAAACTGT.............................................................. 23 2 3 0.67 2 2
...............................................................................................................TGTGCAAATACATGCAAAAATG............................................................... 22 2 3 0.67 2 2
...............................................................................................................TGTGCAAATCCATGCAAAACTCT.............................................................. 23 2 2 0.50 1 1
...............................................................................................................TGTGCAAATCCATGCAAAACTGAAC............................................................ 25 2 2 0.50 1 1
...............................................................................................................TGTGCAAATCCATGCACAACTG............................................................... 22 1 2 0.50 1 1
...............................................................................................................TGTGCAAATTCATGCAAAACTG............................................................... 22 1 2 0.50 1 1
...............................................................................................................GGTGCAAATCCATGCAAAACTGT.............................................................. 23 2 2 0.50 1 1
...............................................................................................................TGTGCAAATCCGTGCAAAACT................................................................ 21 1 2 0.50 1 1
...............................................................................................................TGTGCAAATCCATGCAAAATTGA.............................................................. 23 1 2 0.50 1 1
...............................................................................................................TGTGCAAATCCATGTAAAAC................................................................. 20 1 2 0.50 1 1
...............................................................................................................TGTGCAAATCCATGCAAAACTGAGAA........................................................... 26 3 2 0.50 1 1
...............................................................................................................TGTGCAAATCCATGCAAAACTC............................................................... 22 1 2 0.50 1 1
...............................................................................................................GGTGCAAATCCATGCAAAACTG............................................................... 22 1 2 0.50 1 1
...............................................................................................................TGTGCAAATCCAAGCAAAACTGA.............................................................. 23 1 2 0.50 1 1
...............................................................................................................TGTGCAAATCCATGGAAAACTGT.............................................................. 23 2 2 0.50 1 1
...............................................................................................................TGTGCAAATCCACGCAAAACT................................................................ 21 1 2 0.50 1 1
..............................................................................................................CTGTGCAAATCCATGCAAAACT................................................................ 22 0 2 0.50 1 1
...............................................................................................................TGTGCAAATCCATGCAGAACTCA.............................................................. 23 2 2 0.50 1 1
...............................................................................................................TGTGTAAATCCATGCAAAACTG............................................................... 22 1 2 0.50 1 1
...............................................................................................................TGTGCAAATCCATGCAAAACTGAG............................................................. 24 1 2 0.50 1 1
..............................................................................................................CTGTGTAAATCCATGCAAAACT................................................................ 22 1 2 0.50 1 1
...............................................................................................................AGTGCAAATCCATGCAAAACTG............................................................... 22 1 2 0.50 1 1
...............................................................................................................TGTGCAAATCCAAGCAAAACTG............................................................... 22 1 2 0.50 1 1
...............................................................................................................TGTGCAAATCCATGGAAAACTGA.............................................................. 23 1 2 0.50 1 1
...............................................................................................................TGTGAAAATCCATGCAAAACTG............................................................... 22 1 2 0.50 1 1
...............................................................................................................TGTGCAAATCCATGCAAAACTGTAT............................................................ 25 2 2 0.50 1 1
...............................................................................................................TGTGCAAATCCGTGCAAAACTT............................................................... 22 2 2 0.50 1 1
...............................................................................................................TGTGCAAATCCGTGCAAAACTGA.............................................................. 23 1 2 0.50 1 1
...............................................................................................................TGCGCAAATCCATGCAAAACTGT.............................................................. 23 2 2 0.50 1 1
...............................................................................................................TGTGTAAATCCATGCAAAACT................................................................ 21 1 2 0.50 1 1
...............................................................................................................TGTGCAAATCCATGCAAAACGGT.............................................................. 23 2 2 0.50 1 1
...............................................................................................................TGTGCAAATACATGCAAAAATGA.............................................................. 23 2 2 0.50 1 1
...............................................................................................................TCTGCAAATCCATGCAAAACTGT.............................................................. 23 2 2 0.50 1 1
...............................................................................................................TGTGCAAATCCATGGAGAACTG............................................................... 22 2 2 0.50 1 1
...............................................................................................................TGTGCAAATCCGTGCAAAACTGT.............................................................. 23 2 2 0.50 1 1
...............................................................................................................TGTGCAAATCCATGCAAAACTAT.............................................................. 23 2 2 0.50 1 1
...............................................................................................................TGTGCAAATCCATGCAAAACA................................................................ 21 1 2 0.50 1 1
...............................................................................................................TGTGCAAATCCCTGCAAAACTT............................................................... 22 2 3 0.33 1 1
...............................................................................................................TGTGCAAATCAATGCAAAACTGA.............................................................. 23 1 3 0.33 1 1
...............................................................................................................TGTTCAAATGCATGCAAAACTGA.............................................................. 23 2 3 0.33 1 1
...............................................................................................................TGTGCAAATCCATGCAAAACGA............................................................... 22 2 3 0.33 1 1
...............................................................................................................TGTGCACATCCATGCAAAAATGA.............................................................. 23 2 3 0.33 1 1
...............................................................................................................TGTGCACATCCATGCAAAACTG............................................................... 22 1 3 0.33 1 1
...............................................................................................................TGTGCAAATCCAGGCAAAACTCA.............................................................. 23 2 3 0.33 1 1
...............................................................................................................TGTGCAAATCCATGCAAAAG................................................................. 20 1 3 0.33 1 1
...............................................................................................................TGTGCAAATCCATTCAAAACTGT.............................................................. 23 2 4 0.25 1 1
...............................................................................................................TGTGCAAATCCATGCAAAAGTGT.............................................................. 23 2 4 0.25 1 1
...............................................................................................................TGTGCAAATCGATGCAAAACTGT.............................................................. 23 2 4 0.25 1 1
...............................................................................................................TGTGCAAATCCGTGCAAAACTTT.............................................................. 23 3 5 0.20 1 1
...............................................................................................................TGTGCAAATCCATGCAGAACTCT.............................................................. 23 3 6 0.17 1 1
...............................................................................................................TGTTCAAATCCATGCAAAAC................................................................. 20 1 6 0.17 1 1
...............................................................................................................TGTGCAAATCCATGTAAAAGT................................................................ 21 2 14 0.07 1 1
...............................................................................................................TGTGCAAATGCATGCAAAAATG............................................................... 22 2 14 0.07 1 1
...............................................................................................................TGTGCAAATACATGCAAAAAT................................................................ 21 2 20 0.05 1 1
...............................................................................................................TGTGCAAATACATGCAAAAATGT.............................................................. 23 3 20 0.05 1 1

Anti-sense strand reads

GGTCATGAGAACCTATTGCTTAGAGGATAACTACGTCTCTTATAAGTTTCTGTGACGATGAATGCTAATCAAAACGTCCAAACGTAAAGTCGCATATATACATATATACCGACACGTTTAGGTACGTTTTGACTAACACTATTACACACGACAGATGCCGAAACACTGAGAGAAGTGCGCATAGAGGCGGTGCGTA

***********************************.............(((((..((((((((((((((((((((((((((((((...((((.((((((....)))))))))))))))).)).)))))))))))))))))....))).)))))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:14 PM